Array 1 33201-33588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPP01000034.1 Raoultella planticola ATCC 33531 GRPL.assembly.34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33201 28 100.0 32 ............................ TGTTAAACAGCGCCTGCAACGCCTGGTACTGC 33261 28 100.0 32 ............................ AGACATCACCATCCCATCCACGCGTAGTACGC 33321 28 100.0 32 ............................ TGAAACACGAGCCCGTGCGTACTCAGGTAGTG 33381 28 100.0 32 ............................ AGATACCGATATTCCTCACGGGTTCAGGGGGT 33441 28 100.0 32 ............................ GGATAACTTGGTTACATCACTCTCCCATTGGG 33501 28 100.0 32 ............................ ATCAGAATAAAGCCCACGTCAGGGAGCACGGT 33561 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTTCGCTTTCGCCCGGGGTCAACGTACCGCCCGCGCTCTTGCGCCGGGCAACGTTACGCTCATTAATGCCGGTGATGCGCAGGATGTCGGTTTTCGACATTTCCGTCCACTCGTGAATATTATCCAGAACGCTGACAGGCAATCCCATACTCAGCAGCTCAATCAGCTGCATACCCCGATTCGCCGGTAGCCCGGCATAACGCCACAGCGCATTATCGGCAGGTTGCTGTGCAGGAACCCAGGTTTTCATCTTTCCTCCTGAATAATGACATTTGTCATTATTTATTATAGTCATTTGTCGGATTGTTGAAAGTTTAATCGCTGGGCAGGTTATTAACTGGTTGGAGGGATTGTGGCTAGCTGACCAGACCCTTTTATTTGTCTATTTTGTAACTTATTGATTTTCATTAAGTATGATTAGGACCTTGAAAAAAGGGTGAAGTGAATAAATTTGAGGGATTTTAGATATAAAACAAAGTAGTGAGCTGATATTATCTCA # Right flank : CAAACATCAGCGCGTCACTTGCCAGCGCATACGTGCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-2121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPP01000035.1 Raoultella planticola ATCC 33531 GRPL.assembly.35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55 28 100.0 32 ............................ ACGATGCCGCCTTCAAAGCTGGTTGTTTCGGT 115 28 100.0 32 ............................ TGTCAGGTCGCAAAATGCCTCATCAATACTGT 175 28 100.0 32 ............................ AGACTCTACAGATATCACTGCTGACAGCATGA 235 28 100.0 32 ............................ AAAAAGAGGCGCGGGACTTCCTCGACGCTGAA 295 28 100.0 32 ............................ ACTCCGCGCAGCAATGATCGTATTCTTACAGA 355 28 100.0 32 ............................ CCACGCAGTCCGTCATTACACCTTTTACACAG 415 28 100.0 32 ............................ TTAAAAACTTCATTTTCTCATGAAATTTTTGA 475 28 100.0 31 ............................ GATGGATTCATCAAAGAAAAAAACTGGCGAT 534 28 100.0 32 ............................ ATAACCCTACATGCGGATATAATGTGCAGTCA 594 28 100.0 32 ............................ CAAACCCCGATTGCTCGCGTTGTCACGGCGAG 654 28 100.0 32 ............................ GTTGAAGCGAACATTAAAGCCGCTACAGTTGA 714 28 100.0 32 ............................ TTTGCAGGTCGGTTTTACCGGGCGCGTATTGA 774 28 100.0 32 ............................ AAATCGCGTCCGTTATTATCCTTCGTGTTCAT 834 28 100.0 32 ............................ TATATGCACAACGGGTTAATAGACAGCCTGCA 894 28 100.0 32 ............................ TCACGGGGAACAGTGAATGTATAGTTACTTAG 954 28 100.0 32 ............................ CATGTGATCCCGTTGATGTACGTTACGTCAAC 1014 28 100.0 32 ............................ ATGCAGGCTTGTCTTCTTCGCGGATCATCTCT 1074 28 100.0 32 ............................ GACCGAAGTTGAAGCGCAGGCCGAGGTTGATG 1134 28 100.0 32 ............................ AAGCACCCAGCGCAGTGCATCAGCGTAATCAC 1194 28 100.0 32 ............................ TGAATCCGATAAAGCCCGATGCCAGGCATAAC 1254 28 100.0 32 ............................ GAATGCAATCGGGGTGGTGGTCACAACTGGCG 1314 28 100.0 32 ............................ TCGATACTGACGGTTACTCAATTGACAGTATT 1374 28 100.0 32 ............................ GATAGCCGCCATGAAGATGGGCTTGCCGTCTT 1434 28 100.0 32 ............................ ATAAAAAATTGGGTTTTGAGCCGAGAGGGAAA 1494 28 100.0 32 ............................ GTAATGGGCGATATGCATCAAAAAGTGTGTAT 1554 28 100.0 32 ............................ TACCCACGGCGAAGACGTGCAGTATTTTGTTG 1614 28 100.0 32 ............................ TTTGCAAATCGTTGAAAATCATTGCAATACGT 1674 28 100.0 32 ............................ TGCAACGAACACGGCCAACGAGTTACCACACT 1734 28 100.0 32 ............................ TTTCAGCGCGGCAGGCAAAGGAGATGGGTTTG 1794 28 100.0 32 ............................ TTGGTTCGAGGGCCAGTAGCAGTAACCGCTTC 1854 28 100.0 32 ............................ ATCAGGAATCGCCGGAGAGTTGCCATCCTGAT 1914 28 100.0 32 ............................ TGTACAACGAACGAGTTAGCGAAGCAGAAAGC 1974 28 100.0 32 ............................ GGACTTCCCCGTCAGAATTCGTCACCGGATCG 2034 28 100.0 32 ............................ ATCCATGGTGACTGTGAACCATTATTATTACA 2094 28 82.1 0 .....................C.G.GGT | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCCGTACAGGCAGCTTAGAAATGGCAGAGACATTGTCCATGTCACTTTGTACTG # Right flank : TGTATTAACTAGCTTATTTTCAGAATAAATTGTGCTATTCACATATGGAGTACACACCGGGAAACCAGGCACGGACGAAAACAGTGATTCGAAAGGACCGCCTGCATGACGGTCCGCCATTTTCGTTTTATTAGTCAGCCATTCAACTTTTACTTCTGCAATACTTCAGCAAATTTCGCCAGCCATTGCGGATGCGCGGGCCAGGCAGGGGCGGTAACCAGGTTGCCGTCGACGTGTGCCTGATCGATATCAATGTCGGCATAATGCCCGCCGCTGAGCCGCACTTCCGGCGCGCAGGCCGGGTAGGCGCTACAGGTCCGGCCTTTCAGGATTCCGGCGGCGGCGAGGAGCTGCGGGCCGTGGCAGACGGCGGCAATGGGTTTGTGCACCGCGTCGAAGGCCTGAACCAGTTTAAGCACCTCATCATTCAAACGCAGATATTCCGGCGCTCGTCCACCCGGGATCAGCAGGGCATCATAATCCTGTTCTTTAACAGCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11823-12871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMPP01000035.1 Raoultella planticola ATCC 33531 GRPL.assembly.35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11823 28 100.0 33 ............................ GAATACCTGAGCACGATACAGCCGGACGTCATT 11884 28 100.0 32 ............................ TGTGAGAAGGAAATTAGGCTGCGTAGCCATCC 11944 28 100.0 32 ............................ TACTGCCCCAGGCATCCCTGATCTGTTCTTCC 12004 28 100.0 32 ............................ GGACAAATGGTCGCAGCCCGTCTAAATCAAAC 12064 28 100.0 32 ............................ GTTTCAATGGCCAGACGGAGCATCAGGTGTGG 12124 28 100.0 32 ............................ TCGTCAAATTTTCCCATCAGTTCGGTTTCAAT 12184 28 100.0 32 ............................ TCCATCGCGGTGTATTTCTGAATTAACGGGTC 12244 28 100.0 32 ............................ AGACGCGCACCGGTTATCAGCGGCAATGATGC 12304 28 100.0 32 ............................ GAGTTGGTCATGCAGTATGACGATCTGCGCCA 12364 28 100.0 32 ............................ AACCAGGCAGGATTACACTCATGTCATGACAG 12424 28 100.0 32 ............................ TAGCAGAGAACCTGATTTGTTATATAAATCAG 12484 28 100.0 32 ............................ ATATCCGTGGAAGCAATCAGGCTTTCCTCTGT 12544 28 100.0 32 ............................ ATCGACTCAATCAAACAAGAAATGGTGTTACT 12604 28 100.0 32 ............................ TGGCTGATGCAGGCGCAATTGCCTTAAAAAAG 12664 28 96.4 32 ....C....................... AGAATGCACCGCCCAAGCGATGATGATGAGAA 12724 28 100.0 32 ............................ GTAGTCAAACACGCAGGTGCAGAGCCGCCAGA 12784 28 100.0 32 ............................ AGTAATTCCGGTGATGCTGCAATCAGAGCCAT 12844 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACTGCAGAGGTTACTCACTATGCAGCAAGAGCAGACGGATTTGCCTTGGATTAATTTGCGCAGTCTTTCGAACGGGCAACCGTTCCGTTTGTTTATCCGCCATGGCGATATTCTTGCCGTTCCTGTTGGGGGGGAGTTTTCAAACTATGGGTTAAGTTCGACGGCAACGGTGCCGTGGTTTTGAGATCGACAACCGACGCCCGTTTTTAGGGGGTCGGTTCTCGACATTTTGTCCACTCAAGAATATAACCCTGAGCTCTGACGGGTAATCCTCGGTTTTGCAACTCATCAGTTGCGTATCCCGATTCGTCGTTAACCCCATATAGCACCATAAGTATGACCCGGTCTTTTTTACTGTATACCTATTGGACCCTTTTATTTTCTCTGGTTGTAACTTACTGATTTTTATTAAGAGTAATGGTAAGGCTAAAAAAAGGTGCAATGAGTGATTTTTGAGTATTTTGCATATAAAACAAATTGTTGAGTTGACATCGCCTCA # Right flank : AATAGCGCAGGGTCTACAGGCTGCAAGTCCTCATTACTGTAGGCATTATTGATGATGATTAGCGCGTTTTATATTGCTGCCCGGCCCCGTCAGGACAATAATCGCCCATAAGGATGTCTCCTTTCTGAATACAGGCCGCCATGATCATAAAAATCGTTTGTCTGAGCCTTCTTTGCATCATCCTGCTCTCCCTTGGCGCCAGCCTGGCCCAGGCGATGTATCAGCGGGAGCTACGCTCGCAGGAAGGCTGGTGGTCCGCCCGTCGTGACTCAGCTGGCCTGGCGCCTGACCCCCAGCAAAACGCCCGCCTGGCCATTGTGCAGGTCTACGCTGCGCCGACCTGGGGATGGAAAGGTGTGGTGGCGGTGCATCCCTGGATTATCTATAAACGAGCCGGGGAAACGGAATATAACCGCTATGAAGTGATTAGCTGGGGAGGCGGGGAGAAGGTGCGCCATAATAGCAATCCGCCGGATGGCTACTGGTTCGGCGCGAAACCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //