Array 1 2898781-2896981 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMP01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00762 2014LSAL00762_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2898780 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 2898719 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 2898657 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 2898596 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 2898535 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 2898474 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 2898413 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 2898352 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 2898291 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 2898230 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 2898169 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 2898108 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 2898047 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 2897986 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 2897925 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2897864 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2897803 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2897742 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2897681 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2897620 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2897559 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2897498 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2897437 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 2897376 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2897315 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2897254 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2897193 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2897132 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2897071 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2897010 29 93.1 0 A...........T................ | A [2896983] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2916242-2915421 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMP01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL00762 2014LSAL00762_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2916241 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 2916180 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 2916119 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 2916058 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 2915997 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 2915936 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 2915875 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 2915814 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 2915753 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 2915692 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 2915631 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 2915570 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 2915509 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2915448 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //