Array 1 41729-43221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFJ01000010.1 Escherichia coli strain MOD1-EC5190 MOD1-EC5190_10_length_121820_cov_34.3266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41729 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 41790 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 41851 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 41912 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 41973 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 42034 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 42095 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 42156 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 42217 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 42278 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 42339 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 42400 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 42461 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 42522 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 42583 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 42644 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 42705 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 42766 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 42827 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 42888 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 42949 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 43010 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 43071 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 43132 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 43193 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58723-59423 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOFJ01000010.1 Escherichia coli strain MOD1-EC5190 MOD1-EC5190_10_length_121820_cov_34.3266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58723 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 58784 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 58845 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 58906 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 58967 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 59028 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 59089 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 59150 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 59211 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 59273 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 59334 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 59395 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //