Array 1 163824-163305 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXL01000009.1 Salmonella enterica strain BCW_6233 NODE_9_length_163869_cov_4.68314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163823 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 163762 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 163700 29 100.0 32 ............................. ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 163639 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 163578 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 163517 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 163456 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 163395 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 163334 29 96.6 0 ............T................ | A [163307] ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCCAGTCAGGGGCGCGATATTGCCGCCGTGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 689-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXL01000007.1 Salmonella enterica strain BCW_6233 NODE_7_length_218884_cov_4.72376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 688 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 627 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 566 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 505 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 444 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 383 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 322 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 261 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 200 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 139 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTCACTTCAATAAGTCCTGGCGGTAGCTCGGGGGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //