Array 1 203771-204653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFM010000003.1 Amaricoccus macauensis strain DSM 101730 Ga0415368_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203771 29 100.0 32 ............................. CATCGGACTGAGCCGCTTCTTCGACCAGCTCT 203832 29 100.0 32 ............................. CCGCGCGGCGGCGCAACTTCCGTTCCGGCTTG 203893 29 100.0 32 ............................. TACGCCCGAGAGGCCGGGCTGGACGAGCGGCT 203954 29 100.0 32 ............................. CTGATCGAACGCCTGCGAGCCACCTCGCCGCA 204015 29 100.0 32 ............................. CTCGGCCTGAGCGCCCGTCAGGCAGGCCATGA 204076 29 100.0 32 ............................. CGGTGTACATCGCTCGAAAGCGAGGCAAGGCA 204137 29 100.0 32 ............................. CTCGCGCACGCCGAGCACATGATCCCGGAGTT 204198 29 100.0 32 ............................. GGTGATTTTCATAATTATCTTATGGCAAATTA 204259 29 100.0 32 ............................. GAGAAGTAGGTGTAGGCCGGGACGCCCTCAGC 204320 29 100.0 32 ............................. GTGCGCAACCAGAAGGTCTACGGCGAGAAGCA 204381 29 100.0 32 ............................. CGCTGCACGGCATCGTAGCCGGGAGGCTCGTC 204442 29 100.0 32 ............................. CTCCCCGCCGATCCCGATTGGGAATGGGAGTG 204503 29 100.0 32 ............................. TCTTTGCCGCCGTAAGTGTTGCGCCACTCCGA 204564 29 100.0 32 ............................. TGACAGTTTTGGTCACAACAGTTCACGAATCC 204625 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 CTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : ACCTCGCGAACCCATAGGCCGCGTCGTCCGGAATGGACGCAGCCGAGGCGAGGCGTCGGCGTCCATTCCTGCCGTCCCCGGCCCCTCTGCCCGCGGCGAGAGATGCCGCGAACACGGGGCCGGAGCTCTCCTGTTCGGGCGCTCGTCCTCGCGACCGTCGGGGTGCCTCCCGGTACTCGCGCTGCCCGCTCCCGGCCCCGGGGCATCGTCGATGCAGGCGGGCTGAAGACGACGCTCGCCCCGCCTGTCCCGCTGACGTGGCAGAAAGCGGTGCCCGCCCGCGCGTCTGTCGCGGATGTCGGCCTTGCTGAGCCTTTCGAATGTCCGCAGGGCCAGCCGCGCGCTTCGTCTGCCACGATGCCACCGGGACGAGCGTCCTCCGGGCGGTGGTCCTCATTGCGAGCATCGCGAAGGATTGACCCGCGATCAGGAACCGCTCCAAAGTCGGTAGGTTCTTCAACGCGACCGAAACCACAGGGATTCAATACCTTCCAGCCAGA # Right flank : GGCGGCCCGTCAATCGAAAGCCCGGCGCCCTCTTGGCCCGCTGCCCCGCCGGTGCTATCTATGGGGCGCCCGGTCGCGCCAGGAACCCGCGGTGGCGCGCTGGAGGTCGGCCCGTCGACTGACTGCGACCGCCGGGCATCTCCCTTCCGGCGGCGATGGTGAGTAACCACCCACTTTTTCGCCGCGCCCCGGTAGTCCAGCGCCACAATGGTGCTCCACGCACGACCGGCGCCGTCCCTGTTCCCCGCACGCGCGGGGATGAGCCGTCGGCGGGCTCCGCTGAGGGAGGCGGCGTGGCGTCATAGGGGCGCGGGCATCACCGCACGAGCTTGCTCAGGCTCCTGAAGGCTGCGGCGTCCGCGGACCCGAGCCACTCGAAGACGACCATCTCGGTCGTGACGATGACGCAGCCCGCCCTCTCGGCGCGTCGAAGGGCGCGGTCCCTGTTCTCTTCCCGCCGCGAGTCGACGGCGTCGGCGACCACGTACACGGCATGACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50964-50630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFM010000006.1 Amaricoccus macauensis strain DSM 101730 Ga0415368_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50963 29 100.0 32 ............................. TGGCTGACGATCTGGTGGAGGACGCCAACTTC 50902 29 100.0 32 ............................. TATTTTCGGGATCGCGGCGAAGCGTGGGACGA 50841 29 100.0 32 ............................. CGAAAATACTTCGCGACTTTCTGCGCTGCACT 50780 29 100.0 32 ............................. AGTTCCGCCGGCAGAAGGTCGAACGCGACGCG 50719 29 100.0 32 ............................. TGCGACTACCAGCGAGTCGCCGTCGCGGACTG 50658 29 82.8 0 ....................T.G.T..GA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : CGTATCGAGGAGGTGTTGGAGGCCGGTTCCCTGCCGCGTCCCGAGCCGCCGCCGGAAGCGCTCGGTCCTGCCTTCGACGACAGCCCTGCCGCAGGCGACGAGGGCCATCGTGGTTGATCGGACAGCTTCGCCATGATGGTCATCGTCGTGACCAATGCCCCACCGCGCCTGCGCGGCCGCCTTGCGGCCTGGCTTCTGGAGATCCGGGCGGGCGTCTTCGTGGGGGACTATTCCGCGCGAACGAGAGAGCGGATCTGGGATCAGGTGGTTGGCGGCATTGATACCGGAGACGCCGTCATCGCCTGGACCGCATCAACCGACCAGGGTTTCGACTTCCGCACGACCGGTCAGAACCGTCGAGAGCCGGTGGATTTCGACGGATTGAAACTCGTCGCATTTCGACCCCGGCGGCAGGATTGACCTGGAGGCCGAGAGACCTCAGAATCGGTAAGTTCTTTGACTTCGCGAAAATCCCAATAGCGCAATGCCTTCCAGGCAGT # Right flank : TGGCCTGTGCGCAAGGTTACGGTCGAACGCGTCGTCCGTCCTGGTGGAACAAGGTGGCGGCCGACGAGGGCGCCGGCGGCGCGGATCACCGCGAGGTGCCCGTGACCGCGCTTAAAAGGCGTGGACTCCGCCTGTACCGCGGTATGCGATGATCTCGGCCTACAACTCGGAGATGGCGAGGCTCGAACCACTTCCAAAACGGGCAAGCCAGTGACCCGTGCGAAAGCTCTCGCCAGCCGACAAGGCCTCTGCGCCAGTCCAGACCCATGCTTCGACGAGTAACCGGCGTTGGTATCCTGCCACCGCAACGAGAATACCAAACGCCGCGTGCCGAAAGGCCGCGGCGTCTTGCGTTTGTAAGCCAACGGACGGCCCATCGCGCCCCGCAGCACGTCGCCGGAGCCCGTCTCCGTAAGTTGAAGCTCGAATCCGCCTCAGGCAGCACACGCAGAAACCTCAGCCCGCGCAGCGGTGGCCATGAACGGCGTCGTATGATCTGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //