Array 1 22592-22030 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYT01000040.1 Lacticaseibacillus paracasei strain Lc-10 ctg40_00120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22591 36 100.0 30 .................................... ACAGCATTGACCACATTCAAAAGCAAGACA 22525 36 100.0 30 .................................... TTGACGGGGTCGAATTGCCAGAACCGTTTT 22459 35 97.2 29 ..........................-......... CCTTGTACACTTGCATGCCGTTTCTACGG 22395 36 100.0 30 .................................... AGTGGGCTTAGTCACATATATTTTAGAAAC 22329 36 100.0 30 .................................... TGATTTAGATAATGAGATACAAAAATTTAT 22263 36 100.0 30 .................................... GACCAAAGCATTGCAAGATCTGTCTGATGA 22197 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 22131 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 22065 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AATCAATCAGTTCAAGAGCTTGTAGTCAGCGTCATCATCATACCATGG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [6-7] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 326-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYT01000017.1 Lacticaseibacillus paracasei strain Lc-10 ctg17_00060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 325 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 259 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 193 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 127 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 61 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : CTCGTAGCGGCTAACACGCTTAGTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 32-397 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYT01000072.1 Lacticaseibacillus paracasei strain Lc-10 ctg72_00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 32 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 98 36 100.0 30 .................................... CGCAAAAAATGTTTTGACAAGAACACATCG 164 36 100.0 30 .................................... GGCCAATATCATCAGTCGGGAGATTGTCGC 230 36 97.2 30 ..................................T. ACTCGTCAATATCCTTCTGCATGATCAAGT 296 36 100.0 30 .................................... TATTATCCTAACACATCCATCGAGAAGTTA 362 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : CAAAATATTTCTAGAATTAGCAACTTTATGGG # Right flank : CTGAATATTCTAATGTTGTTGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATCAATTGCGATTAATAACTTATTTGAACCCTGGAAAGCATTAAGTCAGGCGGCCATTTGGCTCGTAAGTGTTGCAATTTCAACTTGTAAGGGGGTCTGGTAGCCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAAGCATGCACATATTCAAAAAGGACGGCAGCGGCAGTTTCATAATCTTCAAAGACCGGCACTGGATAAACACATTCCTTTTTGAGGGAAGCGTGAAAGGATTCCATTGGCGCATTATCATACGGACAACCCTTACGGCTGTATGAGTGGCGGATATGTAGTTCAGTTAAACGTTGATTGTAATCATCGCTGGTATACTGTGATCCTAAATCCGTATGGATAATCAGGTCCCCAGTAATGGTTCGATTTTTAACCGCGCTTTCAAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 508-1337 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYT01000076.1 Lacticaseibacillus paracasei strain Lc-10 ctg76_00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 508 36 100.0 30 .................................... ACTGTTTTCGTGTAGCCGCCGTTTTTAAAG 574 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 640 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 706 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 772 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 838 36 100.0 30 .................................... TAGCTTTATCAAGACCAACGCCACCAAGAA 904 36 100.0 30 .................................... TATGATACTTTTCAGTTGTTGATCAACGGC 970 36 100.0 30 .................................... TAACGTTTGTATAAATTGTGATAATTCTTC 1036 36 100.0 29 .................................... CTCATCGGTCCTAGCTTTGACAATCTCTT 1101 36 100.0 29 .................................... CTACTTCAAAGTGAAGCCCCCCTACAAAA 1166 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 1232 36 100.0 33 .................................... CGCAGCAGGCATGAGCTAATACGTGCGTGAGAC 1301 36 100.0 0 .................................... | G [1333] ========== ====== ====== ====== ==================================== ================================= ================== 13 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : GCCCGGCGTTTTGAAGGTTTGGGGGATCGATAACGATAATACTGAGCTCTGGAAACACCGAGGATTCGGCACATCTTGGTTACCTGGTGGTGATGGCTTTCTTGGTGAATGTAATCAAAGATATTGGTTACTTCTGCGCAAGGAAGCCCAGGGCTTTTTTTAGGATTTCGTTCTCCTCAGACAGCGAAGCCAGTCGCTTTTCCATCGCTTTGATTTCGTCTGGCGATTTACCGGATTGAGTTTTGGCCTGGCCCTGGATCCACTTATGAACTGTTGAATAGCCAATGCCATATTCTCTGGCCAGTTGGGCAGCTGATTCGCCTTGCTTATATAGGTTGATAATGTTTTGTTTGAATTCTTTGTCGTAACGAGTTGGCATGTAAAAATTCCTTCCTTTTGAGAGACGATTTATTCATTATACCCTCTCTTAAAAGTTGTCTCAGGAATCAGCTTACATCCAGTTCAAGAGCAACACCGCGTTATATACAAGGTTGACGAGG # Right flank : AAAGAAAGAGTAACAAAGTCGCATGGACATAGTCTCAGGTAGATGTCGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //