Array 1 1265547-1262759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038009.1 Acinetobacter haemolyticus strain TJR01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1265546 28 100.0 32 ............................ AACAGGCCTTATGACACGAGACTTCCTGATCA 1265486 28 100.0 32 ............................ ATAAACGGAAATTTTTGATTTTTGATCTTTTC 1265426 28 100.0 32 ............................ ATCACCGTAGTAGAAATAATCATAACAATGAC 1265366 28 100.0 32 ............................ AGTACCCGTTATATCTGATTTTGTACATTCAC 1265306 28 100.0 32 ............................ AAAACACATTGATTGGAAAATCCTCAGGATCT 1265246 28 100.0 32 ............................ TCACCCTTGATTTTGAATAGCTTGATTGACAG 1265186 28 100.0 32 ............................ ACCAGCAACATCAGTATGAAAAGTCCTTGTAT 1265126 28 100.0 32 ............................ TACTTTATTTGGAATGTTGTCCATTGGTAACA 1265066 28 100.0 32 ............................ TTAGACACATGGCGAGTTGCAGCAGGAACACC 1265006 28 100.0 32 ............................ CGAAGAAAAACCCATAACAATCAGATGCTTAG 1264946 28 100.0 32 ............................ AAGTTATTTAGTTACAAGGCGTTAACAAATGA 1264886 28 100.0 32 ............................ CGAATAATAATGATCCTAAAAATCCGCCTGAT 1264826 28 100.0 32 ............................ AACAGCCAGCCGATTACCAAATTCCAGTTTCA 1264766 28 100.0 32 ............................ TTGCAACAACTTCAATGGTGAACCTTTAATCT 1264706 28 100.0 32 ............................ TGACTGCGGAAAGTTTTTTTAAATATGCCTTA 1264646 28 100.0 32 ............................ TGATGATAATGATTGGCGTAATACGCCAGATG 1264586 28 100.0 32 ............................ ATGCAGCAAATGAGTTAATTGAAATCAATGAG 1264526 28 100.0 32 ............................ TATACCGATTGATCTAGCCCCATAAGCCAAGG 1264466 28 100.0 32 ............................ TGAATGTTATATCTTGAATCCTCAGGACTGGG 1264406 28 100.0 32 ............................ AATCAACTAAACGCTGATCAGACATAATTTCA 1264346 28 100.0 32 ............................ AGCACCGAGAAGTACTCTTTTAACAGCGCCTT 1264286 28 100.0 32 ............................ CAGCTTTTACTAAGTCACGATTTAACTTTAAT 1264226 28 100.0 32 ............................ TACAACGAATGTGACTAGATTCATATTGAAAT 1264166 28 100.0 32 ............................ CTGCTCGATCCAGTCTGTGCCATAAACATTGT 1264106 28 100.0 32 ............................ TCGTTTGGATCGCACTCCATAAGATTTTTTTC 1264046 28 100.0 32 ............................ TACAATTTTTTCTGGTTTTGTTTTAGCCATCT 1263986 28 100.0 32 ............................ TCGCACCGCACCTGTAAGCCCTGTGATATTAA 1263926 28 100.0 32 ............................ AGACAGCAGTTTATGTTGCACTCATGGAATTC 1263866 28 100.0 32 ............................ TAAAGACACTCCAATTTATTCATTTTTCAATG 1263806 28 96.4 32 ....A....................... TGAACTAGGATTGTTAGGATCGTTTGGATCAG 1263746 28 100.0 32 ............................ ATTTGATTACTCAGGGGCAAAAAGGTCAACTG 1263686 28 100.0 32 ............................ ATTCCTGATATTCATATTGCAGCTGAAGCAAT 1263626 28 100.0 32 ............................ GACAGAAGCAATGATCGACGCAATGGAACAGT 1263566 28 100.0 32 ............................ TTCTGGCGAAGTGTCGGCAGATGCCTGAATAG 1263506 28 100.0 32 ............................ ATTAACTTAGAGAGGCTTGAGCAGCGGAATAG 1263446 28 100.0 32 ............................ TTGTGGTGCATTTATTACATGACGGGGGGTAT 1263386 28 100.0 32 ............................ ATTGCCAATTGAAGAAAATGACCGTCGCTTTC 1263326 28 100.0 32 ............................ AATTCGGTCATTTAGATCGCAAAGAATACGAA 1263266 28 100.0 32 ............................ TGCTGAGATTAGCCCTTCACTTGCTGCGGGCT 1263206 28 100.0 32 ............................ TTCAGCATTTGGATAGTTAAATGCAATGGCAT 1263146 28 100.0 32 ............................ GTTCGAGTTTCAACTACATGAACTTCTCTAAA 1263086 28 100.0 32 ............................ CTCTCAGAGCTTCAAATATGCTATGCGTTGCT 1263026 28 100.0 32 ............................ TTTATTCATGCCATTTTCAGGTGTAAATTCAC 1262966 28 100.0 32 ............................ AGTAAGTTGAGGCGAATAGACTCTTCTATTCT 1262906 28 100.0 32 ............................ TCGCGTAACCGCAGTTTCTCAATTGCAAGATG 1262846 28 100.0 32 ............................ ACGTTGTTATTTGCTGTAGCTTGATAAAGCGA 1262786 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================ ================== 47 28 99.8 32 GTTCGTCATCGTGTAGATGATTTAGAAA # Left flank : CTGCCGAAGGACGTTGGGCCAAAGCGTTATATAAACAACTTGCTAAAGGTTTTGGCCTTGAGTTTACGCGTGATGAAGGAAAAAACTCTCACGATACTATTGTTGATATCGCCAACAGTTATCTCGATCATGGAAATTATATTGCCTATGGCTATGCAGCAGTGGCTTTAAATGGCATGGGAATTAGCTTTGCCCTCCCTATTCTGCATGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCCGATCTGGTTAAAGATGCTTTTGTGATGCCAATCGCTTTTACATGTGCCGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACTTGCCAAGATCAAGATCTTTTGGATTACATGTTTATCTTCATTACTGACATATGCCATAAAATCAAATAATTAAAACTTATACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTATTAACTTAACTCTA # Right flank : TGGCTTTGTTGCACAAACCTCTGCTAAAGGCTTATTCAGTAATATAATGCATAAACGAATAAGCCTGCACCTAAAATCTATCGTACAATTAACTGGTCCTCCTACAACCAAGCTTTAATCAATCGAGGAAATATTTCGATTTGGTTTGATCCTACGACCCAATGGTATGCACAGCCACAAGGCAAGCATGGACGAAATCAAACTTATTCCGATACAGCGATTCAATGCTGTTTAATGATCAAATCTCTATTCCGTCTTTCTTTACGTATGGTCACTGGCTTTGCTCAAAGCTTGATTAAACTCTGTGGTTTGAATTGGACAGCACCAGATTACTCCACCCTCTGTAGACGACAAAAGCATATTGATATTACGATAAGCTATCAGAAAAGTCGTGAAGGACTACATCTATTGGTAGACTCAACTGGCTTAAAGTTTTTAGGCGAAGGCGAATGGAAACGTAAGAAACATCAGCCTGAATATCGTCGGCAATGGCGTAAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGTGTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGTGTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1271090-1271652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038009.1 Acinetobacter haemolyticus strain TJR01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 1271090 28 75.0 28 ....ACT....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTGG 1271146 28 82.1 91 T....C.....C.......G.......T ATAAGGCTATTCTGATCTTAAGTTTTTACATTCGCCACTAACTAACAGATTTAGAAAGCCTTATTTTTTTTCTTTAAGAGTAACTTTGAAA 1271265 28 85.7 32 ...GT.......G..............G ACATTCAAAGAGGCTTAAAGAGATAGATCAAA 1271325 28 78.6 32 ...C..T..TAC.....C.......... ACCCTTTGCTAACATACGCTTTCTGACTTCTG 1271385 28 92.9 32 ...C........G............... AAAACCACTTCATAGATACCTTTTATGGGGGT 1271445 28 96.4 32 ............G............... AGAAGCCAAGAAGCAAAGGATCTGGGTATCCG 1271505 28 92.9 32 .........T..G............... TGATTTAACTTTGTCAAAAAGGGCGTTAAATG 1271565 28 100.0 32 ............................ TCCCTCAGCTTCGAGGCCTTGGTGTTTTGCAT 1271625 28 89.3 0 ...GT......C................ | ========== ====== ====== ====== ============================ =========================================================================================== ================== 9 28 88.1 39 GTTTGTCATCGTATAGATGATTTAGAAA # Left flank : TTTGCTGTTAAAACAGCGCTAAAGCAATTCAAATGTTTACCTAAATCTACTCTATTTTGAGGGTAGGGCATAAAAGAGCAACCTGTTGTCAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATCGTAATGATTGAAGGTAGATCTATGCCTTGCTGTTTAGCAGGATGAGACAAAAGTTTGAAATGTTGTGCTATCATTTGGATAGTCCTCCGTAGTAATTGAATGCTGTGGAAATGGACACTAGGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATTCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGATGATAATTTTTTAAATGGATTTTAAGTATTCCTGATTAAGATTTGTTATAATAGAACTCTTACATA # Right flank : AACTCCATTCAATGTTTAAGGCGACATATTTTGTCGCTAAAAAGCGGTATTAAGCTGATTAAAACTTTCTCTTTTTAAAACAAAAGATTATAGTTTGATTACATTCGAACTTTAACAATAAACTATGCATGTCATTTTCATCTCTGCTTGTGAAAAAAGAGCGTTAAAGAAAACTCGAGCGATCTTGGATAGTTATGCGATACGTACAGGACATTCGTCTTGGCAAGCACCCATTACCATGGACGGCTTAAAAGAAATTCGCAGCGCACTCAAAAAAGTCGCCACCCGACAAACTGCGGTAGCCGCCTACATTAATTTTGGTGTGCGAAGAATGAAGCTGGTATGGGTTGTGGGCGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAAAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCAGGTGCTGCTGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:-0.60, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGTATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1991602-1991869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038009.1 Acinetobacter haemolyticus strain TJR01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1991602 28 100.0 32 ............................ TTATATTTTTCTGTAGCACGATCGGGAGGATA 1991662 28 100.0 32 ............................ TTTGATTTGAGTTCGATCCACAAGCCATGAAT 1991722 28 100.0 32 ............................ GCTATCGCTCTTATATACGCATTGGTGAGCAT 1991782 28 100.0 32 ............................ GAAGCGATTCGCGCCAAAGTGGTCGCATCGTG 1991842 28 89.3 0 ......................C.T..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGTAAATGCGATTTGTCTTTGTAGATTACTCATCTCAATTGTATCTGCATCAACAATCGTTATTTTGCCTACACCTGCACGAGCAAGTAACTCTGCACTCGTACAGCCGATCCCTCCAGCACCAACAATCAGTACATTTGCCAATTTTAATTTTTCTTGTGCTTCAATATCCCAACCATCTAATAAAATCTGACGACTATATAAATGCATTTCGTCATCAGTTAATTCAAAAGTATGTTCTAGATGATCAGACACGTTCCATGATCTCAAAATCGGCTTAATGAATGCTGATTTTAAGTGGCTAATCTCATTTAGCAAAGCATTTAATGCTTGCTGCATCATTTATTTTGACAAATCAACGGATTTACCCCAATATTTTTATTACTCTTTAACACTTTAATAAAATCAATATGTTACGAATTAGCATAAAACTTTGGGTATTGATGTATTTTTCACCACAAGTTAATGTTTTTTCTTAATTTATTTATGCTATTTTATA # Right flank : TACAATCAAAAACAACCCACAGTACCTAGTGAAATTAATGACTTATATCGCTTTTAAATAAACAATTTGTTAAATTATATAAATAGAATATAAGAGATTTATCATGGAAAAAACTCTATTAAAGTTCATCTGTCTTATAACATTGTTAGTTTCAACAAATCCAAATATATATGCAAATGTTTACATACCAATTCCCTCATTAAAAAAGCCTAAAATATCTCCGCATATTAAAGCTCAAGCACTCAAAACGGATGAGTTTGATGTATCTACCAAACAATTATTAGAAAAAGGCTATATTCCTATTAAATCCCAAACATTTAATGGTAGAGATGATTTTAGAGGTTATGAGCACGTTGTAGCAGCGCTAGAAAAAAGAGCTGATCAAATGGGAGCTCAAATTGTACTATTTACTAATGAGAAGCCAACAGGAAGTGTAGATTATTATAGTTTCACCACTCCCTTTCCTCAAAAATCAACAATACAATCTAACTTTGATAATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //