Array 1 347652-349011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOXA01000016.1 Listeria monocytogenes strain FSL R8-5436 contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347652 36 100.0 30 .................................... ACGTATTTTGAAATCTGGATGGCATTTTCA 347718 36 100.0 30 .................................... TCCGCTTAGCCGATGAAATTCCAAGCAATA 347784 36 100.0 30 .................................... TTTATTCACCGGACAAGAAACGACCTCGTC 347850 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347916 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347982 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348048 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348114 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348181 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348247 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348313 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348379 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348445 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348511 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348577 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348643 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 348709 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 348775 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 348841 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 348907 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 348973 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [348998,349004,349007] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //