Array 1 108833-108072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000019.1 Nocardia farcinica strain BJ06-0101 NODE_19_length_127725_cov_36.869543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108832 29 100.0 32 ............................. GATCGCGCGGCCAGTCGCGGCCATCGCCGCTT 108771 29 100.0 32 ............................. TGAATCCGCGACCGAATCCAAGAGCACCACCA 108710 29 100.0 32 ............................. TACCCCGCGGCCTGGAAGCCGTAGGGGCTCAA 108649 29 100.0 32 ............................. GGGGCGCCTGAGCGTGACGGCACCCGCCACCG 108588 29 100.0 32 ............................. TCATCGCCGCAAAAGCTCATTGCCAGGGTGGT 108527 29 100.0 32 ............................. TGGCGGGCGTTCGCGCTGGGTTCGATGTTGCG 108466 29 100.0 32 ............................. CCAGGCCAGTGCCTCCTGCGCCAGTTCCACCG 108405 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 108344 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 108283 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 108222 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 108161 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 108100 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117553-116000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000019.1 Nocardia farcinica strain BJ06-0101 NODE_19_length_127725_cov_36.869543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 117552 29 100.0 32 ............................. CAAGCGATCTGGTCCTCCAGCTCGGCGAGGCG 117491 29 100.0 32 ............................. CCGCCCGGCTGCCCCGCGGCCCCGCCGCCTCC 117430 29 100.0 32 ............................. CAATCCCGTCCGAGCATGGCCCGATGCGTGCT 117369 29 96.6 32 ............................A GGCCGGTGCCGACTTCTTCGCCCAGCACAGGA 117308 29 100.0 32 ............................. ATCGCCGACGGCCCCGACATCGACGATGTCCC 117247 29 100.0 32 ............................. AGCTCCGGGTCAGGGTCCGGCCATTGGCCGTT 117186 29 100.0 32 ............................. GAGATCCCGCGGGGGTGCCAGGCGCCCCACTG 117125 29 100.0 32 ............................. CGCTTGATCGCGGCATCGCGCATCGGGGCGGT 117064 29 100.0 32 ............................. ACCACCTCCCGGCGGACCGGCGAGCGTGATCC 117003 29 100.0 32 ............................. CCGGATCGGAACGCGGTCCCCGAGCAGCAGAT 116942 29 100.0 32 ............................. CGGCCAGGGCCGTTCATCGTGTACCGCGCCCA 116881 29 100.0 34 ............................. CCCCCCGGACCCACCGGAACCGCCGGTGCCACCC 116818 29 100.0 32 ............................. GCTTCCCACTGCTCGCGCGTGTACACCGTCAT 116757 29 100.0 32 ............................. GTCGTCCTGCCAAGCAATCAATTCCATGTCCA 116696 29 100.0 32 ............................. TGTTGGATCACCGGGCCGAGCGCGTCGAAGAC 116635 29 100.0 32 ............................. GCGATGATCTCGCCCACGGTGGCGAACGTGGC 116574 29 100.0 32 ............................. CACCTGTGCCCGAAGGCGGCGGCTTTACAGGC 116513 28 96.6 32 ....-........................ TCGTTCTTGCGACGGGGATCTCGTCGCAGTCA 116453 29 100.0 33 ............................. TTGGAGGCACCCGAGCGGCGGTCGACCTGCTCC 116391 29 100.0 32 ............................. CCGTCCGGCACGCCGCCGGGCCAGAAGACCTC 116330 29 100.0 32 ............................. CAGCCCGACGACCGCGTGGTCAGCCTGAGCAA 116269 29 100.0 33 ............................. ATTGCCGATGGCCCCGACATCGACGATGTCCCG 116207 29 100.0 32 ............................. TATGCGGAGGAAGTAGAAGAGGTGGTAGCGCT 116146 29 96.6 87 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAAGTGCCTCCCGCGGGAGGGATGAGCCCGAAGACTCGACGCGTTGTCCCGCCAGCGGG 116030 29 82.8 0 .........C....T..A.........GG | T,A [116003,116006] ========== ====== ====== ====== ============================= ======================================================================================= ================== 25 29 98.9 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGTTGGTCCGGGCTGCGGTGGCGATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCCTCAGCGAGGTTGCCCGTCTTGTCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : TTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGCGTGCTAAGACTTGGTCGAGGATCTCCCCGGGTTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGGCGGCGGTGAACTGGAAGTTTTCGCAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162-1593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000009.1 Nocardia farcinica strain BJ06-0101 NODE_9_length_239021_cov_34.258910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 162 28 100.0 33 ............................ CGCGGCGCTGGCGCAGCAGGCGTCGCGGGTGGA 223 28 100.0 33 ............................ CAGGTCGGTGTCGAACGCCTGCGTTTGCACACC 284 28 100.0 33 ............................ CCCGCGCTCGTGCCGGTATCCTGACGCTGTGAG 345 28 100.0 33 ............................ CCGCTTGGTCAGTTCGTCATCGGCTGCGGACAT 406 28 100.0 33 ............................ CCCTTGCGCCCGGGCTCGTTCGGTGTTGGTGAG 467 28 100.0 34 ............................ CTACACCGTGAAGTGCCGCATCACCACCACCCAA 529 28 100.0 33 ............................ CAGCGCGGCGACGAACCATCCGCGCTCGACGAA 590 28 100.0 33 ............................ CCGGTGCGCTTGTACGTCTCCTCGTACGGAATG 651 28 100.0 33 ............................ CTCGAATGCGGTGGCGTCGTCGGCGCCGGCGAT 712 28 100.0 33 ............................ CCGACCGAACCGGCCGGTCAACTCGACAGAGAA 773 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 834 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 895 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 956 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 1017 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 1078 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 1139 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 1200 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 1261 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 1322 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 1383 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 1444 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 1505 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 1566 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GAGGGGGTGAAGCCACTGCGCTGACCTTGATGGGGAAATAACTGGCCACCGTTGGGGAAAACCAACTGGCCACCAGCGGGGACGATTACCGGCCGCCCGCGGGGAGAACCTACTGGCCATTGACAGCCCTGGGCCAAACACCTCGGCGTCCCGCTCCGGAAG # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGGTCCTCGACCCGCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1147-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000014.1 Nocardia farcinica strain BJ06-0101 NODE_14_length_186360_cov_34.882105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1146 28 100.0 33 ............................ GTACCGCGAAGCCCTGGCCGATTGGGAAGTCCT 1085 28 100.0 33 ............................ CAGCGGCACGCCGCGGTGGGGAACCACCGAACA 1024 28 100.0 33 ............................ CACCCGCTCCTGCTCCGGTCCGTCCGTGGAGTA 963 28 100.0 33 ............................ CGGCGGCAACGGCGGCAACGGAATCGCCTACAT 902 28 100.0 34 ............................ CCCCGCCAGGTCGTTTTCGTGCCAGCGGGTTTGG 840 28 100.0 33 ............................ GAGCTGGCAGAAGAAGGCTGATCAGGAGGCGCG 779 28 100.0 33 ............................ CCGGATCGCCAAGGGCGTGAAGGTGTGCGACGA 718 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 657 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 596 28 100.0 33 ............................ TCCTGCCACGCAAGCGCGGCGCTACACCGTGCG 535 28 100.0 33 ............................ GGTACGACGAAGGCCAGCCCGGCGAACGGGCTG 474 27 96.4 33 ....-....................... CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 414 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.2 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 831-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000017.1 Nocardia farcinica strain BJ06-0101 NODE_17_length_146353_cov_35.019251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 830 28 100.0 33 ............................ CTGGCCACGGTTGGAGGTGTCGCATGAGTATCC 769 28 100.0 33 ............................ CTCAGGCCAGCGGCGGAACAACGACGATCCAAG 708 28 100.0 33 ............................ CCGGCGCGAGCAGGTCCGGATGGCGGGCAACGC 647 28 100.0 33 ............................ CCGCTACGGCACGGTGATCCGTGCCAAGCCGCA 586 28 100.0 33 ............................ CCGGGTCTGCTCGGGCGTGAACTGCCAGGGTTG 525 28 100.0 33 ............................ CCTGCTCGCCCCGTCCGCCTATCTGGCGTGCGA 464 28 100.0 33 ............................ CAACGGCGCCCGCGCGTGGAATGACCGTCTGTT 403 28 100.0 34 ............................ CTCGCACACCGCGTGTTCGTTCTTCATCGACGGC 341 28 100.0 33 ............................ CGGCAAGTGGCGGAGATCACAGGAATCGCCCGG 280 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGAAGAG 219 28 100.0 33 ............................ CGCTGTGTGGTCGCAGTCGGCGGTGAGCGGCGG 158 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCTGTGTCAGCGGCCATGACATCCTCCCCATGGGCGGCCATTTAAGGCCCCGCTGGTGGCCACCGGATTCCCCGTGGATGGCCAGATATCTCCCCAGGTGATTTGTCCTGGTTGCCGCGCGGGCAGGCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122302-120337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000017.1 Nocardia farcinica strain BJ06-0101 NODE_17_length_146353_cov_35.019251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 122301 28 100.0 33 ............................ CGCGAGCATCGTCGACGAGGAGCGGCTACGCGG 122240 28 100.0 33 ............................ CTTCCGGGAAGGGTGCAGCTTCGCCAGGATCCA 122179 28 100.0 33 ............................ CTCCCCTCGATGCGCCGCTTGGCAGACGAGTAC 122118 28 100.0 33 ............................ CGACATCAGCATCGGCATCATGCGGGGCGGCGG 122057 28 100.0 33 ............................ CACCTCGACCAAGCTCGAGGTGCTCAAGCGGCA 121996 28 100.0 33 ............................ CCGGGATTCCAGGACTGGAAGGACGCCGACCTG 121935 28 100.0 33 ............................ CAGAACGCCGCCTGACCGCGAACCCCACTCAAC 121874 28 100.0 34 ............................ CAGGGGCGTCACCACGTACAGGACGGCGCTGAGC 121812 28 100.0 33 ............................ CCGTGGGGCCTCATGCACCTCGACCGGCCGGAA 121751 28 100.0 33 ............................ CTGCACCGCCGAGACGTCGCCGAGCGCAAACAC 121690 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 121629 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 121568 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 121507 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 121446 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 121385 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 121324 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 121263 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 121202 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 121141 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 121080 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 121018 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 120957 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 120897 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 120836 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 120774 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC A [120753] 120712 27 96.4 33 .................-.......... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 120652 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 120591 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 120365 28 71.4 0 ...G..TG.....CG.TC..A....... | G [120338] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 30 28 98.9 39 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGTTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 132018-131486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000017.1 Nocardia farcinica strain BJ06-0101 NODE_17_length_146353_cov_35.019251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 132017 29 96.6 32 .......T..................... AGGTGTCAACCGGGGCACCACACACCACAAGG 131956 29 100.0 32 ............................. CGGCCCAATCGGGGCACCCAAGCTGATGTACC 131895 29 100.0 32 ............................. GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 131834 29 93.1 32 ............C...............T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 131773 29 96.6 32 ............C................ GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 131712 29 93.1 32 ............CG............... GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 131651 29 93.1 32 ............CC............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 131590 29 89.7 46 ..........T.C............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC T,C [131562,131581] 131513 28 72.4 0 A.......G..AC.T..C..-.C...... | ========== ====== ====== ====== ============================= ============================================== ================== 9 29 92.7 34 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : GGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 144778-143038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPM010000017.1 Nocardia farcinica strain BJ06-0101 NODE_17_length_146353_cov_35.019251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 144777 29 100.0 32 ............................. CGGTTCCTCGAAGTCGACTACGCGCCCCGGGA 144716 29 100.0 32 ............................. GGGAACGTTCGTCTCGGGTCGTAGCTCCCACT 144655 29 100.0 32 ............................. TCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 144594 29 100.0 32 ............................. ATCTCCGATGACGGCAACCAGCTTGAGGTGGT 144533 29 100.0 32 ............................. CTTGCCCTGATACGTCCGTAACCCCGCGTACG 144472 29 100.0 32 ............................. TTGTTCATCGCAATCACGGGATCGCCAGCCTT 144411 29 100.0 32 ............................. TTGGAGACCGCCATCGAGAACGCTTGCAACGC 144350 29 100.0 32 ............................. TCGGGATCGATGCAGGGATTGGTCACGGTGTG 144289 29 100.0 32 ............................. GTGAGAGAGGCCCTGACCGGGTTGTTCCTGGT 144228 29 100.0 32 ............................. CGACCTGAATCGACAACCCGGCATGATCAAGC 144167 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 144106 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 144045 29 100.0 32 ............................. TCCGGACATCACATGCTCCAGTTCTTGTAGGC 143984 29 100.0 32 ............................. TGTGGGATGGAATGGAGTAAGAATCAGATGAA 143923 29 100.0 32 ............................. TCACCGCGGTGAACAGCAAGCTCGCCGCGGTG 143862 29 100.0 32 ............................. ATTTCGCCCCACACGGTGCCCTCACCTCTCAC 143801 29 100.0 33 ............................. TTGACGGGGCAGACCACGCGGGCCACGACCGGG 143739 29 100.0 32 ............................. GGCACCGAGGGCTGGTCCCCGCGCCAGTACAC 143678 29 100.0 32 ............................. CGGCTCACGATCGGCATCGAGGCCGAGAACAA 143617 29 100.0 33 ............................. TCGCCGCGCTCGTCACACCAGCGGCAGCCGTTG 143555 29 100.0 33 ............................. TCGCCGCGCTCGTCACACCAGCGGCAGCCGTTG 143493 29 100.0 32 ............................. GTCACGTCCCCGGAGAGGCTGAGCGGCAGGAG 143432 29 100.0 32 ............................. GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 143371 29 100.0 32 ............................. TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 143310 29 96.6 32 ................C............ TGATCCGGGCGATCCTCGACGCCCTCACCGGC 143249 29 96.6 32 ................C............ TGAGCCGCGATACCTATCGAGCTACGTAGCCA 143188 29 93.1 32 ................C...A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 143127 29 96.6 32 ................C............ CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 143066 29 86.2 0 C...............C...A..T..... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.9 32 GTGCTCCCCGCGCACGTGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GAGAAGCTGATCGTCGCCGACCTCTTCACGCTGTGCTCCCCGCGCATGCTGCGTCGCGGCCGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //