Array 1 936-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUW01000015.1 Ligilactobacillus salivarius strain F_SD_HZ_D3_L_5 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 935 36 100.0 30 .................................... TGAGTGGTGACTCCAGTGATCTTGACTTCA 869 36 100.0 30 .................................... AAGTACGAAGAATTTCTAGCAACGTGCCGG 803 36 100.0 30 .................................... AAACTCGCGACCAAGTATGATTTGCCCAGG 737 36 100.0 30 .................................... CATTGAATATTTTTTCTCTTACTTCATTAC 671 36 100.0 30 .................................... CGGCTGAACGACGGGAATTGATTAAAGAAA 605 36 100.0 30 .................................... ATATCTTCTGTTACTTTAATTGGTTTAATG 539 36 100.0 30 .................................... TGTAGATGGAGTTAGACAAACGATAGATAA 473 36 100.0 30 .................................... ACATCAATTATAAAATTAGCCACGGCTATA 407 36 100.0 30 .................................... GTTGTTCAGCAACTAGTCGTCCTTCACGTT 340 36 88.9 3 ................................NTGA ANT Deletion [302] 307 36 100.0 31 .................................... TATCAAAATTCAGCATTTGGAAATACTAACT 240 36 100.0 31 .................................... TATCAAAATTCAGCATTTGGAAATACTAACT 173 36 97.2 30 A................................... TAATCTTAACTTCCGTAACATTCCAATCTT 107 36 100.0 30 .................................... TGGTAGAAATCGAAATAAGATTAACCATGT 41 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.1 28 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 6-819 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUW01000018.1 Ligilactobacillus salivarius strain F_SD_HZ_D3_L_5 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 6 36 100.0 30 .................................... ATTCAAAAGAGTAACCGTTTGTTTCAATGT 72 36 100.0 30 .................................... GAAATAAAAAAGCCCAGAGCATAAAGCCCT 138 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 204 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 270 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 336 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 402 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 468 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 534 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [567] 600 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 718 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 784 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 12 36 95.4 35 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : GACGCG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //