Array 1 252918-253572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROQ010000003.1 Listeria booriae strain FSL L7-1827 NODE_3_length_468182_cov_30.157362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 252918 28 83.3 0 .G...G.-....T................- - Deletion [252945] 252947 30 83.3 36 CG.....CG..G.................. TAATCCGAAACTAGGCACTCAAGCAACATTTGAAAA T,C,G [252951,252953,252960] 253016 30 100.0 35 .............................. GATTCTGCGTGGTTGTATTGCCAGATGGTTATTAA 253081 30 100.0 36 .............................. GGGAAATGGAAAGATTGGTGATTTAGTAGCAACGGC 253147 30 100.0 36 .............................. AATCGTCGTCACAGACACAGAACGAGCCGTTAAGCT 253213 30 100.0 36 .............................. ACGACCCGAATCCTTCTAAACGCATCGCCTCGTTTA 253279 30 100.0 36 .............................. AATTGAAACACCAGCCTCTAAAAGAATCGGGATTAG 253345 30 100.0 36 .............................. TATGTTAAAACAACATTCAAAAAACAAGATGGTGAA 253411 30 100.0 36 .............................. TCTTAGCACCGGAACAGCCACAAAAGGGTGTTTCAA 253477 30 100.0 36 .............................. ACGTGCCAATTATCGCACAACGTCCTGATTTACCAA 253543 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 97.0 32 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : TCCAGCACCGCAATGTTCAGCGCCTTGCCCTCTTCAGCAATTTGTTTCGCAAGATTCGGAGAAGAAGTCGTCATATCAATAGCAATAGCTCCCGAACGAAGCGTAGTCAACAGCCCGTCCTCCGCCAAGTAAAGCTCCTCCACATCAGTCGGATATCCAACCATCGTGATAAGCACATCGACCAGAGGCGCCAAATCCTGCGGTGTCTCATGCCAGATCGCCCCCTCTTGAATCACACTTTCCGCCTTACTTTTCGTCCGCGTATAAATATGTACCTCAAACCCCGCCGCCATCAAATTCCGCACCATACTAGCGCCCATAACCCCAACACCAATAAATCCAATTTTCGTCATCGCAAAAACTCCTCCTTCTATACAGTTCGCTTCTAAACAAAGTGTACATCTGGGGGAGTAAAAATGCAAATGGAGTTGGTTGGGGATTGTTGAATGATAATTGATTCTATAAAAAATGGATAGAAACACTGCTTCTGTGGGCAATCT # Right flank : CAGGTACCCCATCAACGCCTACTCCCATCATACCTCAAACACTCAAATCTGTCGACCGACAACCAAATCCTAAATTTCCGCTCCCGAACCTTACAACCCAACCTCCAAAAACGGTCTCAAATCTGGTGACACCAACGCTTAACAAAAATCTGTCGATGCCCCCTAATTTCCACGCTACCGACGGTCGACAGATTTTTAGGATTCTTATTCCCGCTTTTATCCACAAAGAAAAACCCGAGGAAAATCCCCGGGCCTTCCAAACAACGAAATTACTCCGCTGTATATTTATTAACTAACGCTACAACTTCTTCTTCTGTAGCTTGTTGTAGTGCTTCGTCCGCTAGTTTCGCCATTTCTGTGCGATCTAGGCGTTTGATTAATGAACGTGATTTTAGAATGCTTGATGCGCTCATAGAGAACTCATCTAGACCCATTCCTAACAACAATGGTACAGCTGTTTGATCGCCGGCCATTTCGCCACACATACCAGCCCATTTGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 240385-240086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROQ010000005.1 Listeria booriae strain FSL L7-1827 NODE_5_length_330833_cov_33.878542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 240384 36 100.0 30 .................................... AAAAAACAATGGCGCTAGACCTTCTGAAAT 240318 36 100.0 29 .................................... TTAAAGATAGCGTGAAATGGTTTCCAGTC 240253 36 100.0 30 .................................... GTTGGTCGTTTCCTTCTGGCTGTGCAACTA 240187 36 100.0 30 .................................... AAAGACAACAAGAAGGCATTTATACAGTAT 240121 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ATTGTACAGATATCCCCATATCAAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCCTTGCTCCCGTCTTTCTTCAATAAACGTATAACCTCATCATTTTTGAGAAATGGTTCTAGTGAGTCTTCCAAGTAAAAAGCATCAAGAACTATCTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGTTACTAACCTCCGATTAATTAAAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 324078-325083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROQ010000005.1 Listeria booriae strain FSL L7-1827 NODE_5_length_330833_cov_33.878542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 324078 30 100.0 35 .............................. TGTTTATAATCTTCTAATAGATCCAACGATACATC 324143 30 100.0 34 .............................. GTGACACCCTTACTTACCATTGCTGAGGTATATT 324207 30 100.0 34 .............................. ATTCAAATCCGCGGTTGTGTATGTCGCCGTTTTT 324271 30 100.0 35 .............................. TCCATTAAAACGTCTCCTCATTTTCCATGTTCATT 324336 30 100.0 35 .............................. ACGGCCACAAAGCTAACGGCGTTAACACCCATAAA 324401 30 100.0 35 .............................. TGACTCGTTCGCTATCGGGCGTCCCTGCCGTCGTT 324466 30 100.0 37 .............................. ATCCCTTCTTAGCCTCATCGCTTTTAGCCATCTTAAC 324533 30 100.0 35 .............................. TTCACTTCCACAACAACTTGTGCTTGCGCAACCTG 324598 30 100.0 37 .............................. AACGTACAATTTTCTGGGGTGCAGTTGAACTGGCTGG 324665 30 100.0 36 .............................. TGTCTTGATCCGATGGATAATTCACATGGAACTTCA 324731 30 100.0 36 .............................. ACGACTGGAGCAAATGGTAAAGTAACAGTTTCTGAT 324797 30 100.0 36 .............................. CCAGTATGTCTGTAATGGAGCTCCTGCAAGAGTATT T [324809] 324864 30 90.0 35 TG...........C................ CAGACAGATGCGGCGGCGGCTGAGTTTGAACGCTT 324929 30 100.0 37 .............................. TTGTCTTCGCCTAATGAACCGAAGAGCGCACTTGTTG 324996 30 83.3 27 CG...........C...A......C..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [325053] 325053 30 73.3 0 .C....TC.......C.A.....CA...C. | G [325063] ========== ====== ====== ====== ============================== ===================================== ================== 16 30 96.7 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGTGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAGTAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTCAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCGGTCTGTTTAGCTACGATTGCTTTGGTAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCCAGTCTTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTCTTATTATGGTTGCGCGAAACCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCGGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 19439-15251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROQ010000004.1 Listeria booriae strain FSL L7-1827 NODE_4_length_384019_cov_36.774466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 19438 36 100.0 30 .................................... TTTCTAGTGAACAAGCTCCCAACACAGTTA 19372 36 100.0 29 .................................... ATACGAGCGTCCACAACATCATTACCGAA 19307 36 100.0 30 .................................... TAGTTCAAGAATTAGGAGACCATTCAAATA 19241 36 100.0 30 .................................... TATAACAAGTACTACACGAGAACCAAGGGT 19175 36 100.0 30 .................................... GCAGTTTCTTTTCTAAATTTTGCGCCTCTT 19109 36 100.0 30 .................................... ACTTAGGGAAGAACGGTAAGAAGACAGCTA 19043 36 100.0 30 .................................... CAAACGAAGGAGAGCCAATTATAAAGTTTG 18977 36 100.0 30 .................................... TTTTTTTTGAAAATTTAAATTTTCATTATA 18911 36 100.0 30 .................................... AAAGTGATAAAGGTGTGATGCGATAAGAGT 18845 36 100.0 29 .................................... TTCTTCTCCTGATTTTTCTAATCGTTTAT 18780 36 100.0 30 .................................... GTAAGTTTTGTTGTTTCCATTCGCTTTATA 18714 36 100.0 30 .................................... AAACAAGCCAATTACATTTTATAAGAATAT 18648 36 100.0 30 .................................... CAAAGCAAGCAGAAATCTTTTTTTATGGTT 18582 36 100.0 30 .................................... GAATTTCAACATTCTTCAACAAACGCTGCC 18516 36 100.0 29 .................................... TGAAGACGAGGTGTTTGATCCGAAGAATT 18451 36 100.0 30 .................................... AGTATATTGAAGATGAATTAAGGCATTATC 18385 36 100.0 29 .................................... GCAGTTACTAGACAATCTTCTAAAGCGTC 18320 36 100.0 30 .................................... TCAAAGAAAACACACCAATTAGATATGTAA 18254 36 100.0 30 .................................... TTTCCCCAACTTTAACAACTAATAAAGGGG 18188 36 100.0 30 .................................... GTACAATTCGGTCATACACTGCGCTATAGT 18122 36 100.0 30 .................................... TGATTGATGAAGCATGTCCAAAGACCTATC 18056 36 100.0 30 .................................... ACCACTATTCCCGTAGTGCCTATTATAGCA 17990 36 100.0 30 .................................... GTAATCAGAATCGAGATAATACGTGCGGTC 17924 36 100.0 30 .................................... AGTACCGCGGCGACTACCGACCAAGCCCCA 17858 36 100.0 30 .................................... GGGATTTAGTGGGTGCAACTGATGGCGGTG 17792 36 100.0 30 .................................... AGGTGGATTGTAGCAGTAGAACACATGAGG 17726 36 100.0 30 .................................... TAACAATTGGTTTACCTGAGTGACTATCAA 17660 36 97.2 29 .........T.......................... ACAAATAAAAACTATCCACGTGAACGGCG 17595 36 100.0 30 .................................... TATATTTGTATTAGGAAAGATTCCATCCCA 17529 36 100.0 30 .................................... AACGTCGGTGATGACGTTGTAATTGTGTCA 17463 36 100.0 30 .................................... GGGGCGGGTGAATTATCATGGAAAAAGCAA 17397 36 100.0 30 .................................... GTAGAAAGTAGGGGATTTGATGTATTTAGT 17331 36 100.0 30 .................................... AATTTGTTGGTGCAAAAACTGGTGGAGTTA 17265 36 100.0 30 .................................... AGCCACCACTCACACACCACACTCATCCTT 17199 36 100.0 30 .................................... TGCTACTGCAAGACTGTATCCAGTTGGGAA 17133 36 100.0 29 .................................... CCAACAAGTTGAGCTATGTCTGCACGCGT 17068 36 100.0 30 .................................... ACAATATTACACATCTTGGCTATCTATTTG 17002 36 100.0 30 .................................... ATGTAGATGAAGTTCAATTAGTCATTATGC 16936 36 100.0 30 .................................... CGAGATATAAAAAAGGCAACGATTGAGGCA 16870 36 100.0 30 .................................... TCGGCTTGCGCTAATGAATCAGCTTCCAAG 16804 36 100.0 30 .................................... CATCGACATGCGAAGCTCGTTTGTGTCGAT 16738 36 100.0 30 .................................... ACGAGTATTGTAACAAAATTGGAACACTAA 16672 36 100.0 30 .................................... CTCTTTAAATTAGTTGGCAGGCAATGGGTT 16606 36 100.0 30 .................................... TTTAAACTCTTTATTTAATGTGTTGACACC 16540 36 100.0 30 .................................... TTCACATCTTTATAAATATGTTAGCCTTAA 16474 36 100.0 29 .................................... TGTCTTGGATTTGCGCAATAAAATAACGA 16409 36 100.0 29 .................................... CGACTTCCGCCCGCTAGCAACTGTGCACG 16344 36 100.0 31 .................................... CCGATGTCCTTTGCGCTCACAGCTATCTTAG 16277 36 100.0 30 .................................... AGTGATGAATATCCTGTAACGCCTTTCCAT 16211 36 100.0 30 .................................... TCACGGCTAAAGAAGCCATGGAGTTGTTAT 16145 36 97.2 30 ................G................... CTCAGATTTCTAAACGCGGTGTTGGCCGGT 16079 36 100.0 30 .................................... TCCTTATGAAACACCTCCTTATGCTATGTA 16013 36 100.0 30 .................................... AATAGAACAGCAATATCGAAAGAAGTCCTT 15947 36 100.0 30 .................................... AATTGGTATGTCATACACTCAACAAGACCT 15881 36 100.0 30 .................................... GAGCAATTGTTGAAACTACCGAGGCATTGC 15815 36 100.0 30 .................................... AGCGTTTGGTGTATTGGTAATGTTGAGTGT 15749 36 100.0 30 .................................... ATATCATCTTATAGAACGAGAATCTTCTTT 15683 36 100.0 30 .................................... TCAAAATCATACTTAAACCGCAGAATCTTG 15617 36 100.0 30 .................................... GATATTTTTGATTTGATGGATGTTCCAGTA 15551 36 100.0 30 .................................... ATAGATCAGTAATTACAGACTCAAATATGA 15485 36 100.0 30 .................................... TATTTTTCCTGCAATGGGGCACATGCCCTT 15419 36 100.0 30 .................................... TTTTCAGTATCATCAACGTCACGCGGTGCA 15353 36 100.0 30 .................................... TTATCATAGGCACCCTCAGACAATTTGCTG 15287 36 80.6 0 .......................AAA.G.....CCA | C [15255] ========== ====== ====== ====== ==================================== =============================== ================== 64 36 99.6 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACCCTTGTGTTGGTGGAGGGGTTTAGGTCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAAGAATGTTACAGGAAATGGCTAGAAGAGGTATGCATGTCATTGTACTTGACGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAACTCTGAAGACTTTCTGCAAGCTATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTACAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATAGAACTAAATGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTTATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCTCAGAATCGGACGAAAATAAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTGAAACGTACTGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCTGGAATTATCGCTGAATATGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 48248-47756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROQ010000007.1 Listeria booriae strain FSL L7-1827 NODE_7_length_115031_cov_25.542086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48247 30 100.0 36 .............................. ACTTAGATGAGTACAAGAAACGCGTCGATTACCTGT 48181 30 100.0 37 .............................. GATTATAAAAAGGTGCTAATATTAAGATATTATAGGC 48114 30 100.0 36 .............................. TCCTTTTCGTAATGATAGAAGCTCATGATTAGTTGA 48048 30 100.0 36 .............................. TTTGTTTCGACTACTTTGTCGTAGATTTCCGCGGCT 47982 30 100.0 35 .............................. CACGGAAAAGACTTCCCTTTTTATCGAAGCTGAAA 47917 30 100.0 36 .............................. AAAATATCTAGTTGGTATCGCATGGAGTGTTTTTCT 47851 30 96.7 36 ....C......................... TAGTGTGCCAGTGCGCCACCTAAACTGTGTCCTGTA 47785 30 80.0 0 .................C.A...CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.1 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAACGCAATATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCATCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTGTTTTTTGCTTAGGGAGAGAAGGGATTAGGATGGTTTTCGAGAGGTTGAAATAAATAATCAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCCCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAGCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //