Array 1 65300-64555 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVML01000011.1 Akkermansia sp. BIOML-A50 scaffold11_size89823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 65299 31 100.0 34 ............................... GCCAACCTCTTCTATCAAAGCCAAACCCCGGTAA 65234 31 100.0 35 ............................... AGGATTTGGAACTTACCGTTTCACCGTGGGCCGAA 65168 31 100.0 34 ............................... TATGAGTGCGAAAAGTGCCACTCGATCACCGCAA 65103 31 100.0 33 ............................... CCGGCTGACGTTGCGGCGATGCGAGAGGCACCC 65039 31 100.0 34 ............................... TACAGTCCGCAAGTTGTTCTTCAGGCGCGTTACA 64974 31 100.0 34 ............................... CCGGCGAGGATCACCTGGTGGAATTCGTATTGGA 64909 31 100.0 35 ............................... CAATTTCTCCAATCAGGCCGCGGCATCCGTGCAGC 64843 31 100.0 34 ............................... TTTCCGCATCCCATTCGATTTTAACGTGTTATAA 64778 31 100.0 32 ............................... TCCGGGTTGGCGTTGTAGGTGTCGTCTATCAC 64715 31 100.0 35 ............................... TACCTGTCCCGCACTTTTTGGATTAACACGGCCGT 64649 31 100.0 34 ............................... ATTTTATGCTCATCCGTCCATCCCCTGCGCCTCA 64584 30 77.4 0 ...................A..-..CAT.TG | ========== ====== ====== ====== =============================== =================================== ================== 12 31 98.1 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TGATGGCCTGCCTGGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCTGTGGTGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTATCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGGTATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : GATTGTTCATAATTCGAGCAGAATGCTTTTTCATATACACTGTAGAATGCAGGAGCAACGGTTATGCTTCAACATTTCACGATGCTAAAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCTAAGGCCGGTTAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTTATCAGGCTTCCTGCCTTCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAGTCCTCGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45247-45749 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVML01000013.1 Akkermansia sp. BIOML-A50 scaffold13_size72357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 45247 33 100.0 33 ................................. CAGAGAAGTTTAAGAATCTCGGAGAGATAGGCG 45313 33 100.0 34 ................................. GCCTACTACAACCAGCTTAATGGCGAATACATGT 45380 33 100.0 34 ................................. CTGATGGTACGGCCAATCCATCTTTGGTAGGCGA 45447 33 100.0 34 ................................. TTGATATTGTACCGGTATCCCGGCATCATGGACA 45514 33 100.0 35 ................................. TGTGCTGGGGTCGATGATCCATTTTTGGCTGTCGG 45582 33 100.0 35 ................................. GTCCAATGCGACCAGATTTTCGACCACGTCCACTA 45650 33 100.0 34 ................................. CACCAGTAATCAAAAATCTTGATGTCCCATGACT 45717 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGTCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCCCGCCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTACAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CCGGGCTGACGCATGACCGGAGCAACAAGGCTTTTGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATGATTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTATCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCACCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCTTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCGCATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCGCACATTTCCACGCTCCACAACCCGTACCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 102506-101537 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVML01000002.1 Akkermansia sp. BIOML-A50 scaffold2_size198733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 102505 33 100.0 33 ................................. CGGAATCCGTTGCGACGCTGAAGGGGCCATGGC 102439 33 100.0 33 ................................. CCCCGGCAAAAGGAGGGGACGAAAAGACCTGGA 102373 33 100.0 35 ................................. GCGTTGAAGAAATACAGGTACTTGTGCTGAAGAAG 102305 33 100.0 35 ................................. CGGGTGTACTATCTCGCGCCTGACCTTAAAATTGA 102237 33 100.0 33 ................................. TTGCAGGAAGTTATTCCTGGTACTCCTGATGCT 102171 33 100.0 34 ................................. AGGCTGCTGCTGTTACGGAAGCAAAGGCGGCGCG 102104 33 100.0 33 ................................. CTGACGAACTCATTGAAGATATTGTACACCTGG 102038 33 100.0 34 ................................. CGGCAATTTTGTGTCAACTGACGTGCCGTTCAAA 101971 33 100.0 35 ................................. AAGACGTGGAGTAGCGTACTTGATAAATTCCGAAA 101903 33 100.0 33 ................................. ATGAAGCAGGAAATTGCAGTACAGGCACCATCC 101837 33 100.0 34 ................................. GTATGAATCTCCCACGCACTCTTCTGTTCCGTCT 101770 33 100.0 33 ................................. CGTGAAGGTGGAAGTGATTGACGGCGCAGGAGA 101704 33 100.0 33 ................................. ATAGGCTAGAGAGCGGACCGGCGTGCGGATGGG 101638 33 100.0 34 ................................. GAGAGGGAGGCGGATGAGGTGTCTGCGGAGAGCG 101571 33 81.8 0 ...................C....AC...T.CG | CG [101546] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTTTCTCCGGCCCAATTGGTTGAAATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGTGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCATAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAAGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTACCGTCTTCGTGAAGTTGGCGCAAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGAAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCTGCCTGGGAGTATTCTCCGTCCGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 113127-111016 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVML01000002.1 Akkermansia sp. BIOML-A50 scaffold2_size198733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 113126 31 100.0 34 ............................... CACCAAAACACCACACCGACTAATACCCCTCGAC 113061 31 100.0 34 ............................... ACTTGATAGACGCCGTGAATTCGTCCTAGACACG 112996 31 100.0 35 ............................... GCGTAAAATTCAAACACCTGGATAACACGCTGATA 112930 31 100.0 34 ............................... GGGAACGCCAAGGTTCGCGGGGACGCCGAGGTCT 112865 31 100.0 33 ............................... ATACCACACGTTGTTGGGATCATCCTCAAAGCT 112801 31 100.0 34 ............................... TGCGTGCATACCGTAACGCAGGGGGCGTCCAGCG 112736 31 100.0 34 ............................... CGTTTCCAGCACGGGCGGGAATCGCGCGTTGGGA 112671 31 100.0 34 ............................... TCCGAATACCTCCGGGGCGCCAAACATGTAAGTT 112606 31 100.0 34 ............................... TCATTTGCAGGGGTCCATCCTTCCTTCCCGGATG 112541 31 100.0 34 ............................... TGGTTCGAACTTCCGCATGATAGCACCTTTCTGA 112476 31 100.0 34 ............................... CCACCTTACGCCTGCGGATGTTCACTACCGGAGA 112411 31 100.0 34 ............................... AGCTGTGCTACATAGCCCTGTTGTTTCTTCGTCG 112346 31 100.0 34 ............................... GTTCCTGTCATAGACAAGGAGGCTATCTACGCCA 112281 31 100.0 34 ............................... CGGCATCATTTGGAGTCATGATCTGACCTTGCCA 112216 31 100.0 33 ............................... TCTTGAACAGGCATTACTGTCTCAGGCTGAGCA 112152 31 100.0 34 ............................... TATGAAGCCTGGGATGAGTGGGCTAAGGAGTGGA 112087 31 100.0 33 ............................... CGCCGCCCGGAGGCGGCGGAAAAACCGCATCAG 112023 31 100.0 35 ............................... CAGGAGTTTTTCCTGGGCTTCCCTTCCGGCCAGGG 111957 31 100.0 35 ............................... AGAATTCGAAGCGGAAGTCCGATAATACTGCAAGA 111891 31 100.0 33 ............................... CATGTCCAGCAGCAGGAGGCGAATGACGCCGCC 111827 31 100.0 35 ............................... TGGATGCGGGAAGTCGTATTGGAAAAGCGCTCTCC 111761 31 100.0 34 ............................... ATCATGATGGATGGTAAGCAAGGCAAGGAATCCT 111696 31 100.0 35 ............................... GAGCCGCAAAGCGAGGACGGGCGTTTTAAAACGGA 111630 31 100.0 34 ............................... CCAATCTGTGCGGTCGGAAGTTGGAATTTTATTT 111565 31 100.0 34 ............................... ATTTTCATTTTTCAATTTGAGAATGGAGAGGTGA 111500 31 96.8 34 .............A................. TTTACGGCGGTGGAGTTTACCGGGTTGAAGAAGT 111435 31 96.8 34 .............A................. TTCCGGGCCTCTTCCGTTTGCTGCCCGCGCTGCG 111370 31 96.8 34 .............A................. GTATTGGGTAGAGAGCAAGATGGTGAAGGGAGGG 111305 31 96.8 34 .............A................. AACGGAAGTTTCTGGAGAAGGCGCATGGCCGCAA 111240 31 96.8 33 .............A................. GTTTAAATTATCCATATGATTTAATTCTATGAT 111176 31 100.0 33 ............................... GGCGAGAGAGTTCGAGCGTAGCGGCCAGAAAGA 111112 31 90.3 34 ....................C.A.......G TCAAAAAAGGGATCCAGGATCAAAAAGCTGGACA 111047 31 71.0 0 ......T...........TA.TT..AT..CA | A [111029] ========== ====== ====== ====== =============================== =================================== ================== 33 31 98.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAAAACGATCCTTCCCTCAAAGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAAGAACGCGTCGCCGTTAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGGTAATATGTTCCTTAGCGGAATTAAATATTGTAAATACTCCAAGGCCGTTCCGCTCATGGCGGAACGGCCTTCTGTTTTCCAGAACTTGTAATGAAAGGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAATGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGAAGTTCGGCGATTGCTGTAAGTCATTGGAAAACGAAGTTTGACATATCCAATTACAAAATTTAAGTCGTGCGGAATATCGTGATGGAGAGAAGTTGGCGCAAAAAGCCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCTCACGCT # Right flank : AGACAGAAAGAATCTAAAATGCTATTAAAACAATGAGTCCCCTCAATAGAATTTTCTAAAAACGGAAGTGTTTAGTAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTACCATATCATAGTATGAAGAAATAAATATTGCCCCAATTTTATTTAGAGGGGTTAGTTTACAAGGGAAAGGTAAAGTCTAAATTATAAGTAAATTCAAAGCCCGGCCTATTTTCAATGAAAATAGGCCGGACAGGAGAGATTAAAATCCATCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTACCATCATTATTGACAATGAGGCTTCTATGGACTTTTCCAGAAGAATATTGACCTGCAGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCCCCTTCAAACATAAAAGGAAGAGTATTTTTTAATAATTCTGCATCTTCATCACTAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 187710-186476 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVML01000006.1 Akkermansia sp. BIOML-A50 scaffold6_size310501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================================================== ================== 187709 31 100.0 34 ............................... TCAAGGCAGCCGATGTGATTGACGCGGCAATCGA 187644 31 100.0 33 ............................... TTTGCGTTGCGCAAAACTCCATGATACCATCCG 187580 31 100.0 34 ............................... GCCTCCACAGAAGCGGCCCACTTCTTGGCGAGTT 187515 31 100.0 34 ............................... TGAGCCTCCGCACTACGGGCGGCAAACTCACTCA 187450 31 100.0 33 ............................... TTCACTCATAATCAATTAACCTGAATCAAACTG 187386 31 100.0 34 ............................... CTGATGGACGCCGTGTTTCCGGGGTGATGAACAA 187321 31 100.0 33 ............................... AAGCAATCACACTTTTCGCACACATGCAATAAA 187257 31 100.0 35 ............................... TCTGTACCTCATACCCGCGATAAGAATGAGACTGA 187191 31 100.0 34 ............................... CTACCTCTCTAACCTCTCCTTTTATTGAAGAGAA 187126 31 100.0 34 ............................... CTCTCTCATTTCCTCTCTCATTTTTGCCCCTGAT 187061 31 100.0 34 ............................... AGGGCCGCCTCCGCGCCATCAGCAAAAGCTCCGG 186996 31 100.0 34 ............................... ATCTCCGACCAAGTCCGGTCCTTGATAGGTGCCT 186931 31 100.0 34 ............................... AGCTTCCCGTACTCCCGGCTCAACTGCCGCTGCA 186866 31 100.0 69 ............................... TCCGATTGGGGAAGACGGGTGCGTGGATTGAAACCGCGGGGAGGTTGGCAAATTCGGCGTCGGTCATAA 186766 31 96.8 34 ............C.................. TATGCTTGCTATCTTTCCCCCTAATTCCCTGTAA 186701 31 96.8 33 ............C.................. ACGCGCCAGCTGCACAACAATCAGGGCGGCCGG 186637 31 96.8 35 ............C.................. GGTCAATGGAGTTGAGGGTACCCGTGATGGTTTCC 186571 31 96.8 34 ............C.................. TATGTCAGGGCGCCACGTTTGATATTGCTACTAC 186506 31 87.1 0 ............C.A...T........C... | ========== ====== ====== ====== =============================== ===================================================================== ================== 19 31 98.6 36 GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Left flank : GACGGGGGCGCCCTTAAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTACGTCATTGAGGCTTGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAAGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTTGGACCTCTGACCTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGAAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCGGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTATCAGAAGGGAAATGGCGTTTCCAGAGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGACTGGCTGTACAGAAAGATGATGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAGCAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 109338-108850 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVML01000015.1 Akkermansia sp. BIOML-A50 scaffold15_size119779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 109337 31 100.0 35 ............................... CCCCTCAAATAACACTCCTCATGCAACCTACGCTG 109271 31 100.0 34 ............................... CCAAACTTGTCCCTGTCCACCATGAAATCCCCTA 109206 31 100.0 34 ............................... CTGCCGCCTTTGACTACATGGACGGCGTGGGCGT 109141 31 100.0 33 ............................... AATGGCTATCAGGAGGCAGCTCCGGAACACCCA 109077 31 100.0 35 ............................... CCCGCGACCTTGCCGAGGGGGAAACCTCCCCAGTG 109011 31 100.0 34 ............................... GATTTCACAGAAGAGGACAGAGCGGAAGCCAGAA 108946 31 100.0 34 ............................... AGCAAAATCTGGAAAACGGAACATCCAGCCTTTT 108881 31 83.9 0 ....................GC...G...GT | T [108857] ========== ====== ====== ====== =============================== =================================== ================== 8 31 98.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCCTTTTTCCATTTCACAGGCTTTCCGCTCCAAGAGCGGAAAGCCTTTTTTATGCCGGAATACCGCCATATACGGTAGTGATCCGTACCCAACGAGTTGTAAATTGCCCGGAAAACGGATGCGGCAGTACGCCACGTAATAATGGGAAGAGACGTTTTCCGGCACCTCCTTTCCAACCCGTCTCCATGGTGCAGGTGGGAAAGTTTCTGGACGAAATGCGCGGGACGGACTACTATTACTCCTGCATCGCGGCAGGCACGGGCCGTCAGGTGGCCGGAACGACTCCTTGGCGGGATCTTTTTCTGCCCTTCGCACTCCCCGCGCCAACCCCCAGCTCACAGGAAAATCCCAGAACACCGGCGATTCCTGTAACTCGCAGGGTATCTTAGATTGACATCCCCCATATACTATTTCAGGCGTGGAATATGCATCTCCGCGGGCAGGTTGGCGCAAAATATCCTTTTCGTGCCTGACCCTTAACATATATATTCCCCCGCC # Right flank : TTATCAGGAGCAGATGGTCCGATGCGTTCTTCTGATGATTCCTTTTGCCTGAAAGGCTTTTCGATGACGTTCAGACCATGAAAAAGCGCCGGACCCCGGGAAGGGGGCCGACGCTTGCGGTATAGGAGGGGGGAATTAATGGGAGCAGCTGGCGCAGGCCCAGCCTTCGCGGATTTTGGCAAAGAAGTCGTTGCCTTTGTCGTCCACCAGGATGAAAGCGGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCTACCTTTTTGATGTTGTTCTTGGCAAGAATAGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGTTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTTTCCTGGAACAGGTCCACATAGGAATCCATGCGTCCCGCGGTGGTAGGCCCGAAGGAGCCGGAGGGATAGCCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //