Array 1 9489-9278 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000303.1 Streptomyces hainanensis strain DSM 41900 NODE_303_length_9829_cov_87.5455, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9488 28 100.0 33 ............................ CGCAGCGGGCCAGTGAGCTCTGCGCGCTGCTCT 9427 28 100.0 33 ............................ CGTGCGGTTCAACGCGGGCGGGCTGCTGCGGGG 9366 28 96.4 33 .....................T...... CAAGAGCGCCACGGACGTGCACCAGATGGGCCT 9305 28 75.0 0 ..G........CTT..........CCG. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 GTCCTCCCCGCACGCGCGGGGCTGTTCC # Left flank : GGCCTGGCCCCCACCCCACCTTCCGCCGACGCGGCCTTGGCCGCACACTGCTCCTCCGGGCCCTGGCCGAGGCCCGGCGTGTCGATCCCTCCGAGATCCGCCTGTGGACCAACCTGGCTGGCCCCCAGCGCGCCTGGGAACTGTACGAAAGCGTCGGCTTCCACCGGACGGAGCGATTCGTCCGCTACCGAAAACCGATGCCCGGCGCGTGGTAGAAGTGGAACCACTGCCATCAACAGCCGGGGTGGGGGAGCGGATTGGGTGGAATGCCGGTTAGGTCGGAACCTGCGGAAGTAAGCAAAAACACGCCGTGCCCGACGTAAACCCCCAGCTCACGACC # Right flank : AGCGCGGTTCGGTAGGGCGACTGGCCCTCGGACTGCGCGGTCGGCTCCGCTACGTTCGGTGGCATGGACTCTGCCACGTACCTTCGCCACCTTCGTCGCGAGTTGGACGCTTTTCGGCGGTGTCTCGACGGCGATCTGGCCGTGCCGATCGAGCACTGTGGGGACTGGACGTTGCTCGACCTGGCGGACCACCTGGGACGGGACAACATCTGGGCGGTCGCGGCCGTCGTCGAGCGGCGTGGGGATTACGAGTCGGTGCCGGCACCGCGTGAGCGCGCGGCGCTGGTGCCGTGGTTCGAGAAGGGCGCTTCGGTGTTGCTGGACGTCCTGGACACCGACCCCGCCACCGGCGCCTGGACGTTCCACCCGCCGCACACCGTCGGGTTCTGGCAGCGGCGCCGTGCGCTGGAGACGTTGGTGCACCGTTGGGACGCCGAGCGCGCGCTCGGCATACCCGGGCCGCTCGACCTGGAGTTGGTCGCCGACGGCATAGCCGAGGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACGCGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3571-2408 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000001.1 Streptomyces hainanensis strain DSM 41900 NODE_1_length_59955_cov_84.2894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3570 30 100.0 36 .............................. GCGGGCAGCTTCCCCGGGGTCGTCCTCGCCGCCGAC 3504 30 100.0 37 .............................. TCGAGCGCTGCCATCGCGCGGGCCACGGCCTTGGCGT 3437 30 100.0 36 .............................. GCGGTCCTGGCCGGGTGGTCGCTCTCGAACCAGACG 3371 30 96.7 37 ....................A......... AGTTGCTTGACCCGCCGGTCTCGAACCGGCGGTGAAA 3304 30 100.0 35 .............................. ACGTGCGGGGCAAGGCCCGCAGGGCGCGCGTGGAG 3239 30 100.0 39 .............................. GTCGGTTGGTCGACGGAGCCGACGGGCGGGCGGGTCTGT 3170 30 100.0 37 .............................. TGGTACTGCTCGCCCTTGACCTGCACCTGATCCGCAA 3103 30 100.0 36 .............................. CCGCACCACTCACACATCGTCCGGTCCGGATCCTCG 3037 30 100.0 38 .............................. AGGCGGAGGACGAACTCCGGCTGAGCCCCAAGGAGCGG 2969 30 100.0 37 .............................. ACGACCTCGAGCTCGTCGCCGCCCCGCCGCCTCTCCG 2902 30 100.0 34 .............................. CCGGGCGGCAGGGCCAGCGGGCCCTCGATGAGGA 2838 30 96.7 36 ..............T............... CCAGCGCCGCCGCGACGTACTCGGCGGCCGGCCGCT 2772 30 100.0 36 .............................. TGCACCTCGACGGCGCCCGCGACCAGAACACCGTGG 2706 30 100.0 36 .............................. GTCATGAGCTGGTCTCCTTGGGGGTGTTGGCGCCGT 2640 30 100.0 40 .............................. ACCCGTTCGCCGAGGAGACGCTACGCACCGCCAATCCGGG 2570 30 100.0 37 .............................. GCGATCCGGCGCTGCATGATGCCGGTCGCGATACTGC 2503 30 83.3 36 ...............A..CA.....A...T AGGTATCCGGCCAGGACCGCTACGCCGGCGGGCCAG 2437 30 70.0 0 .C...C........GA..T.......AGGT | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 97.0 37 GTCCGTCATCAACCCCGGAGGGTTCGCAAC # Left flank : CCCCGGCTACGAGCCGCTGTCCCTCCAGGAAGCCGCAGCGATCCGCGCGGACTTCGGCGACTCCCCGCCCCTACCGGAGAAGACCTGGTTCCCTCTCCTGGCCACCGGCGGCGGCGACCTCTACGCCGCGGTCCCTGCCCCTGAAGGAACTCACTCACGCGTCTTCTCCGTGATGACCGGCTACCCACCGCGCCTCGCCTACCAGAGCATCGAACAGATGCTGAGCGTCTTCAACCGCTGCTACGGCGAGGGCATCTTCTTCGTCAACGACGAGGCCGGCATGCTCGACGCCGACGACGACCGGTGGGAGGAGTTGGAAGACGAAGCCCTTCGGGCCGACGGAGACGCCTGAACCGTCCCATTCCAATGGCTCGTGTGCCCGCACCTGGCCACCGGGCCCACCCGCTCTGACCTGCAACGATGCACTACCGTCGAGTCGCTGCAGAAAGCCGCGTCACAGCGATCCCCGCCAGTACTCTGACCAGCACCTTTACCGTCGG # Right flank : GCAAGCCACGGCGATCCAAGAAGCAAGGCCCAAAGAACGTCCCGAGCATATTCCGCAGTGGGGAGCACTGATCCGACCCGCTTCCCCACGCCGCGATGGTGCCCCCTACGAGGCGGGGCGCCACCGTCACCCGTTCAGCGGACGCGCCGCCCAACCAGCAGCGTGACGTCCATCACACTCACCAACCGCGGCCTCCAGGTCTATTTCCCCTGGTCAGCACCCCATTTCACCACCTGCAGCGGCAGCAGCTTCTCTCCGGTGGGTCCGATCTGTGTGGATGTGTTCATCTGCGGGCAAAAGCCGGTCAAACAACCGTGACCGCCAAGCCGTGGAGACTCCCACTCAGATCTTGCGTCAAGCCCGCGCTGGCGAAGTCTACGGCGCACCAAAACGGGGCTGGCGTTGACCCTGTCGCCGACGCTCCACCGGATCACCAACCGGCCCTATCGACTGCGGCTTTGCGGCAGCAGGACTCCCACAGGCTCAAAGGACAACTCCTG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCATCAACCCCGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 12526-13024 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000001.1 Streptomyces hainanensis strain DSM 41900 NODE_1_length_59955_cov_84.2894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12526 30 86.7 36 TG.....G.T.................... CCCCGCCCCGGGGCACGAGGACAGCCCGGCGCCAGC C,TT [12528,12531] 12595 30 100.0 36 .............................. CCACCGCATCGCGGAGGCTCTGGTGGTGTCGCCAGC 12661 30 100.0 37 .............................. TGGGCAGGTCCCATCCCGTGGTGGGGATGAGGATGTG 12728 30 100.0 37 .............................. CGGTCGGCGCGGCTGTATCCCGTGCGGTGGTGGCCGC 12795 30 100.0 37 .............................. CGGCACTGCCCTTGATGCGCGACATCGCAGCTCAGTG 12862 30 100.0 37 .............................. AGGCCAGCCGGCGGGCCGACCCCTGCCAGCCCTCCCC 12929 30 100.0 36 .............................. CCGCTGGGACCCCGAATCGTCCGGGCGAGTGGTCAT 12995 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 37 GTTGCGAACCCACCTGGGTTGATGACGGAC # Left flank : AGAAGCGCACACCCGACGGGGCGCGTAGACGAGCGAGCATCCGCGTCACGAAGTCCATGACCTCCGTGATGCTGAGATCCGCAGCGAAATCAGCCGTCAGCGAGGAGCACCAGTCCGCCGTGATCCGCCAGCTGTCCGCGTCGGTCCGAGCCAGTTCCAGCCACACATCACCGTCGCCGAGACGTATCCCAGGCTGTTCCACGATCGCCCTCCGACATCCGTAGCCCGGGCTCAAGATCCTATGGGCATGCCCGAAGGACCAGGGCCCGGCGCCGTGGTGGCGTCGGGGCCCTGCTCGCTGTGAGCCGAGAAGGCCGGCGACGTCCTCAGTCCTCGTATATCGGTGTGAGGAAGTATCGGAAGCCGGCTCGCTCCCCGGGCAGTTCCCGGACGCGTTCTGCTACGGCGGTCGTGCTGCGCTCGGGCTGGGCGTCCGAGCGGTCAGGTTGTGCAGCGTGCCCGGTCGTTATGGGGTGGCACTCTCTTGAGGGTGCGTCGCC # Right flank : CCCGATGGTAAAGCGCCTGGTTAGAACGGTGCTGCGACCCGGATGGGCAAGGGACTCTGCAGCGACTCGACGGTAGTGCATCACCGCAGGTCAGATCGGGTGTCTTGGCTGATCAGATTGTGTCTCCTGCAGGTGAATCGCCGTTTCGCAGGCCGACCGAAGTGTCTCACGGGCAGGGCGCGGGCGGCAGGAGACGGCAGTAGCGATCAGCACCCCCCCCGTGGGCAGGTCTGCCGGCCGACCACAGCCACCTGGACATGCCATCCGATGATCGCTGATGGCACTGGTCACGGGCGCCGAAGGACCTGTGAACAGACGAGCCGGGGCGTAGTCTATTTGAAATTAAGTGTTGCCATCTTGCGTGATCCGCATCGGCTTGGAATGCTGGCGCCGGCGGGTGGTCGTGCGGCTGCCGGCGTCAGCGACTCGGTTCGTCTGGTCATGCGTCGTACGCACTCTCCCGATGCCACCACGTCGGCGAGCCTGCTGTCGACGCGATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCACCTGGGTTGATGACGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 41507-40541 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000001.1 Streptomyces hainanensis strain DSM 41900 NODE_1_length_59955_cov_84.2894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 41506 30 100.0 38 .............................. GGGGTTCGTCGGCCTGCTGCTGGTGCAGGACCATGCGG 41438 30 100.0 38 .............................. AGGAGTTCGGCCAGGAGCTCCAGGCGCTCGCGGCGCGG 41370 30 100.0 36 .............................. CTCATGTGCTGTCCCTCCCTGGTGGCGCCCCCGGAC 41304 30 100.0 37 .............................. AAGTTCCGCAGGTTCCGCAGCAGCGCCATGTAGCCCA 41237 30 100.0 40 .............................. ATTGGCAGGGGGATCTTCGGGTTGCCTACGTCAAGAACAG 41167 30 100.0 36 .............................. AGCGGCTCACCTCGGCCGCCGGCTCGGCCATGGACG 41101 30 100.0 36 .............................. CCGCGACCGTCGCGGACGGGGCGGCCCCCAACAGGT 41035 30 100.0 38 .............................. GGCCGTGCAAGCGGGTTGATACCGACGCAGTGTTCGGG 40967 30 100.0 37 .............................. CTATTCTCGCGCCACCAATCGGAGTTCTTCAGTGCGC 40900 30 100.0 36 .............................. ACCGGCTGGCGCGCGAACTGACGGTACAAGAGGCGG 40834 30 100.0 37 .............................. GTGTGCCACGAGAACGGCACGGTCGCCACCTCCTACG 40767 30 100.0 35 .............................. ACGACCGCACCCGCGTACAGGTCGCCGCGACGTCC 40702 30 96.7 37 ..............G............... GCCAGCGTGCGGGCCTGCTTCCAGCGGCGGTCAAGGC 40635 30 93.3 35 ...T.....................A.... ACTCGCCAGCCGAGGGCCGGGTCCGGCAGGCTGGG 40570 30 93.3 0 .............T.G.............. | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 98.9 37 GTCCGTCATCAACCCAGGTGGGTTCGCAAC # Left flank : CTTCCACCCGTTGTCGTGCAACGAGCGCGCCATGTCCGCGTCCTCACTCCCGAGCAACGCGTACACCACCCCACGCGCCGGACCGTGCACGTCCTCCCAACGCAGGCTCGCGGCATCCGTCTCCACGTCCACCCTGATCCGCATCAACACCCCCTGGCGGCGCCCTAAGTGACCAACGAGATACCGAGAGAAGCGGCCGCAGCCACTGCGCACTCTAACCGAACATGGAGCGAACCATAGCCATTACCCGCAAAACACAGTGAAGCCACCTAAGTTGTGATATGCGCTGGCCGCGCTTGTGCTCGTGGTGTTGGACGCCTGTCTGTGCCGAGCCCAGCCGTCATAAGCTAGCGAGGCCCACTGACAATGGCCTCCGAGGAGCGCTCCAACCCATCATCTTCAACGCTCTGACCAGCACTGATGCACTACCCCCGAACCGCTGCAGAACCGCTCGTCAAGAGGCGTCTTAGCGTGCCGACGACCTGCGGCTTTACCCTCGG # Right flank : GTGACGGCGTCGGCGGCGAGGACCTGCGGCGGCGACTCGAATCCGTCATCAACTCTGGCGGGCTCAAGGTGCAAGCCACGACGGCCCAAGAAACAGGCACCGAGAGATGTCCCGAGCGCGTTCCGCAGCGGAGAGCAGACGATCCGGCCCGCCCACCACGAGGCGGGGCGGGGCGCCACCGTAACCCGATCAGCGGACGCGCCGCCGAACCAACCGCGTAACGTCCATCACACTCACCAACCGCAGCCCCCAGGTCTATTTCGCCTGGTCAGCGCCCGACCTCACCACCTGCAGCGGCAGCAGCTTCTTCCCGGCGGGTCCGATTTGTATGGATGTATTCATCTGCGGGCTCAAGCGCGCGTCGAGCTGCAAGCCCCTGGCCACCGGTAGGGCGACCGGGTGTTCGGCCGATGCCGGCCGGGTCGCGAAGCGTGGGTCAGGATCAACCTACGCAGCCCCGAACCAGTGTCAGGATTCCGGGGCCGCGCATGCTCATCGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCATCAACCCAGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 50642-50012 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000001.1 Streptomyces hainanensis strain DSM 41900 NODE_1_length_59955_cov_84.2894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 50641 30 100.0 38 .............................. CCGACCAACTCCCCCGCGCCTGCACCCCCGAGCAGGCC 50573 30 100.0 35 .............................. CGCTGCCGTCGGTTCTCCGTCAACGTCAGCCCGTC 50508 30 100.0 38 .............................. AAGCACATCAGGGGGATGGTGAATACCCTCTGCCTGAT 50440 30 100.0 37 .............................. AATTCCTGAACCGGCCGGGCCGGCCGCCATCCGCAGC 50373 30 100.0 35 .............................. GGGAGACCAGGGAGGTCTCTCGGGTGATGACCCGG 50308 30 100.0 41 .............................. GGCCTCGGTCTCCTCGGGTCGGTGGGACGGGGGTTCGCCGG 50237 30 100.0 35 .............................. TCGCCGGGGCGATCACGGACGGCATCGGCCACTCC 50172 30 100.0 36 .............................. GTCGCGGTGCGGGTGACTTCGGCGGTGGCGCCGTCG 50106 30 93.3 35 ...............A..G........... CTGATGGCGTCGCGCTGGTCCGCCAGCGTCTTCAG 50041 30 86.7 0 ...............A........TC...T | ========== ====== ====== ====== ============================== ========================================= ================== 10 30 98.0 37 GTCCGTCATCAACCCCGGAGGGTTCGCAAC # Left flank : CCGAGGACCGGTGGGTGAAGGTCGACAACGGCAAGACGTTCCGCCAGCGCTGGGAGGAGGGCGGCGTCCAGGCGATGGTGGAAGACCTCCTCCGCGTGGGCATCAAGTGCGAGGTCATCCGAACCAAGATCCCCAGAATGCGGGCACCCAAGATCCACATGAAGCTGTCGATCCCCAAAGACGTACGAGAGCGCCTCCTGGTGAAGGAAGACGACTTCGCCGACCGACTTTGAGCGACGCACCAAGAGCCGGACCACCGGCACCCCCGGCAAGCACCGCTTGTCGGGGGCTCGTCATCCCCGCCAACAAGGGCGCTCGCTGGGATTCTGCGTGAGCATCGACCTCTAAGCTGGATCCCGTCCCGAACTAGCACCGACGCCCCGCGCGGCTAAGTCGCACACATCGCCCTGACCTGCACTGATGCATTACCGCCGAGTCACTGCAAAACCGAGCCTCGCCACCGGTGCGATCGTCAGGCTGACCAGCTACTTTACCCTCGG # Right flank : GCGAGCGCCAGTGCTCTGCCTACGTGGATCATCAGCGCTCAATTGAGAAGAAGAGACAGGAATCCCTCACACCCGCTGGCTCAGAGGATTTCCCCCGGCCCACCCAGCTCAAGGCCGAGCGTCGCCGACCGGACCAGCCCAGGCTCACGGGCGGTGTAGGTCACGATGCTGTCGTGGGCCGGGTTGATGATCGTGGTGAGGGCGCCCATCAGCGCGCGGTACTGGGCGGCGGACAGTTCGCCCTGGAAGACGCTGCGTTGGGTCCAGTGCAGGTACTTGCGGCAGGTCTTCAGGACCTTGGGGTTGCGTTCCGCCGCGGTGTCGTAGACGAGGATGACGAAGATCGGGATCACCACCAGGGGCGGAACGGCTTGTAAAGGGTGCCTTCGAGGCAGAGGCGTACGAGCTTGAGGGCCTCCAGGTGGATCAGCTCCTCGTAGCTCACCTTCCGCTTCAGGCTGCGGTGGTAGACCGTCGTCGACAGTTCCTCGCGCATCAGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCATCAACCCCGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 127-397 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000036.1 Streptomyces hainanensis strain DSM 41900 NODE_36_length_26700_cov_87.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127 29 100.0 31 ............................. AGCGGCACGCTCCACGAAGAGGGCTGCTGGC 187 29 100.0 32 ............................. CCCTGGATCAGCGGGGCAGGGGTCGAGCACCC 248 29 100.0 32 ............................. ACGTCGGAGGGGCAGTACATCTGGCAGCCGTC 309 29 96.6 32 ............................T TCCGGACCGAAATACGCGGACATCAGGCCGGA 370 28 86.2 0 ....................C..-.C..C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CGCCCGTTCAGACCTCCCACTGCCCCTTCAGCAAGACCCGCCCGACTCTGAAAACATGGAGCGATGACGATGGACCGAAGCGATCACGTTCTGGCAAAGTCGCCCTAACACTCCAGGTCAGAAAGAG # Right flank : CGGCGGCACGGGAGTTCCAGGGTCCAGGAAGTGGCGTATCCCACGCCAGCAGGGCAATCCGAGCTCAACAGCTGCTGGGAGTACGGAGGGCAGGTGTTCCCGATGCAAGCGGGACTGAGCTCAGTACTTGTTAACGCCACTCAGCACAAAGCGCCACGCGCCGGGGAACAGTCGGGAGGTGGAACTCCAGAAGACCTAGTCGGGCGGTGAGGCGATCTCAGGAGGCTCTTCCGGCCGGAATGCGATGAGAGTGAGGCCGTCGAAGTCCAACGGAATGCGGCGGCGTTCACCGGCGGTGCGGAGTGCGTAACCCTGTTCGTTGGCCTCCGGGTGTACGAGGACTGCGGCGCCCGCGCCGATAGATGCGCTGACGACGTGCCAGAGTTCGTCGCGGACGCGGCCGGAGAGGGTGCCGACATAGAGACCGGGTGTGGGTTCGATCATCCAGCGCGTGAGAGCACCGCGGACGTGGTCCGGGACGGCGGTGGTGTTGAGCACGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10587-12138 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000036.1 Streptomyces hainanensis strain DSM 41900 NODE_36_length_26700_cov_87.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10587 29 100.0 32 ............................. ACCGAGAAGGAGGCGAAGGAGCGAGCCCCGCA 10648 29 100.0 32 ............................. TCGCTGACGATCCAGAAGGGCGTGCCGCTGAC 10709 29 100.0 32 ............................. GCGCCGCCGACTATGGACAGCTGACCGTCGAA 10770 29 96.6 31 ............................T GGCCGAGGAGTCCGAACGGCTGCACCGTATC 10830 29 100.0 32 ............................. TCGGTGACGACCGTGTACCAACTGTCGTCAGT 10891 29 100.0 32 ............................. AGCAGCACAACCCCGAGGCGCATCGCAATGTC 10952 29 100.0 32 ............................. TTCGTGCTGCTGGACTGCCGGGTGTTCACCGG 11013 29 100.0 32 ............................. CGCACGGTGTGCCTCCGGGTGGTGCGGTGTGG 11074 29 100.0 32 ............................. AAGCACGACGAGGTGAACGGCTACGACGTGGC 11135 29 100.0 32 ............................. CTCCTCGTGGGCAGCGGTACCAAGTCGATCCC 11196 29 100.0 32 ............................. GTCTGCTACGGCCTCGGCTTCCTCGTCGACCC 11257 29 96.6 32 ............................C GCGGCCGAGTGGGTGTCGGGGTGGCAGGCGAA 11318 29 100.0 32 ............................. TACTCGTCGATGGTGTGCCAGGTGGCGGCAGC 11379 29 82.8 30 .......................TCCGG. CCAGAACGGCACGGCCGCCAAGAAGATCTG 11438 29 100.0 32 ............................. GCCGGCTGGACGTGGATTCGCCACATGCGCCC 11499 29 100.0 32 ............................. CGCGGGCGAGCTGGGCCGGCGCCTTGACCCGT 11560 29 100.0 32 ............................. GGTGCCCTGGACCTGGCTGCGGCGGCCGAGGT 11621 29 93.1 32 ......................C.....A GTGGCGCGCAATCCGGCCGCCGAAATTCGCAT 11682 29 100.0 32 ............................. TAGTTGCTCCCCAATCGCCCGAGCGCCCTTGG 11743 29 100.0 32 ............................. GAACTTGCCTCGGTGTTCGTCGACCCCGAGGC 11804 29 100.0 32 ............................. GTGCCGTCGTGGATCTGGGACCGGTAGTGGTC 11865 29 96.6 33 ............................C CCGGGGTTCGGCGGGCGGACCGGCAGCGGCGGC 11927 29 100.0 32 ............................. TGCACCACGTCGTGTTCGTGAGCGGTACCGGC 11988 29 100.0 32 ............................. GACATCTGGACGGGTGTTTGTGACCGGCACGT 12049 29 100.0 32 ............................. GCGCGGATGACGCCGCCGACCAGGCCGCCCTC 12110 29 93.1 0 ........................A..T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : ACGCGGCAGCACCGCATGAGTTGCTACCTCATGACGGATCCTGCCGGCCGAGTTGTCCACCGACCGATCGTGCGCGTACGCGGTTTCCCCCAGGAAGGCACAGTGTGCTGGCCGACTGCGCAGGATCATGTCCTGAAACTGCGGAATGATCTTCCCGAGGTCGTGCAGCCCAGCCCAGAACATGAGTGTCTGCCTGGCCTCCCCCGCCGGCACACCCAACGCCTCAGCGAACAGCCGTCGTTGCCGGACAGTCAGCACCCGATCCCACACCGCGCCGCACACCATCGCCGTGTCGATGAGATGCCCGATGACGGGATAGGGCTCATCCAGCCCATCGGACTTGCCACATAACCGAGCGTCGAGCACCACGCACCTCTTTCCAACCATGCTGAACCGGGGCTGGGTACTCAAACACACGCCTCTGACAACATGGAGCGGTGACGGCGAAGCCCTACCTTCAAGAGTCGGCAAAGTCGCTCCAACACCCCAGGTCAGTAAGG # Right flank : GCTGATCACTCAGCCGCCGGTCCGCCTTTCGATGAGGTCGTCGCGCAAGTGATGTTGAGGATCCCGGCCATGGGTGACAGGGCGGATAACTGGCCGCACCGTCAAGCGTCTGGGCCAGATGCGCGTTGGGAAGGCCGTGGAGTTGTGACGGCCTCCCCCTCCAACTCGCTGTTCAGGGCGTATTCCGCCCCAAACACGACGAACGAAAGAACGGTGAGGTACAGGGGGACGGCGAGAAGGGCAAGCGGGTCAAGGACGAAGGCAGCAGCAGCGCAACGATCAACTTGCTCTCAATTGCGAAGCCATACCGAACGCGGCTCGGTAGAGCCGCTCCAGTTCCCTGGCACAGCGGGCACAGTAGAACAGTGGCACCACGCCCAGCTCACCGACCACCTCGCCACTGCTGACCAACGGCTCTTCGGCCTCGCCACACCGCCAGCACTGGAGACTCGCCCGCAACGCGGTGCCCACCCGCCGCATCGTCTCGGCGCCGTCGTCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16398-17096 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000036.1 Streptomyces hainanensis strain DSM 41900 NODE_36_length_26700_cov_87.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16398 29 100.0 32 ............................. CCGAGGATGTCGGCGAACACCTCCTCCGACTG 16459 29 100.0 32 ............................. CCCAGCAGCACCTTGGGCTTGCGGTCGCCGGC 16520 29 100.0 32 ............................. CCCCAGTTGACGGTGGAGGGGCGGGCGCCACG 16581 29 100.0 32 ............................. TAATTGGCCCGCTGAGCCTTTCCGACGTACCT 16642 29 100.0 32 ............................. GCGGTAGCGGCGATCCTGGCGGACCCGCAGAA 16703 29 100.0 32 ............................. TTGCCGGGTGAGGTGTCGGCGAGCACCCCGAA 16764 29 100.0 32 ............................. CCGGCATCAGGTGGCCCACGTGGTTGCGGTAG 16825 29 100.0 32 ............................. GGCTCCCGATCTTCGGGCGTCGCGCAGCATGG 16886 29 96.6 32 ............................T TCGGTGGCCGTGTCGGTGTTGAACCACCCGAC 16947 29 96.6 32 ..................A.......... AGCTTCGACTCCATCCAGGAAGGTCTCCTGTT 17008 29 100.0 32 ............................. CTGCGGGCCTGGCGTCGGTTCTTCGTCCATCG 17069 28 86.2 0 ................-C......GG... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCGAGTGGGGGTGTTCCG # Left flank : GGGCACATCCCGGCCCGACCTCCCACGGCTGAACGTGCTGACGTCCCAATTACGTTCGAGCGCCTGCCGTGCGACGGCACGCCCGAGGAACCAGCTCCCGCCGAGTACGAGAATCCGCATGCGTCGATCCTGCCCCACGCATGGACATCGTCAGCACCATCTGATCAAGCGGCAACGAGTTTGCTACCTACCGGACGCCCCCTGGCGAGCGGCAGCGCGCTCCCTGCCTCGAGCGAAAAGGCAACCTCATCAGGTCGTTCCTCCGTGCCAGGTGGTCGACCGCCTTCTCGACGCGGGACACCCCGCTTTGGCCAACGGGGCCGCACGCTCGGCCCGGTCACGACCCCACGGCCTCGGAGCCCGTCCCATCATTCGGCCGAGGCTGGGGACTCGCTACATCGCAGCGGGCACCGGAGTCGTTCTGACACCATGGCGAGGTGAAGACGGGCAGCCAGGGTTACGAATCGGCAAAGCCACTGTAGCGCCGCAGGTCAGAAAGG # Right flank : GGTGACGTTCACCGGCTGGAGAACGGCCTGACGAAAACCGGGCTGGACACGCTCCTCGACATTCCGCCCGCCTTCCTGATGCCCGGCGGGCCGCCGCTCCCCGAGGAGTAGCCCTGGCCGTCGCCGCCCACCCCGAGGACGATGGCCAAGGCCCTGCGTGCTGGCTCGTCTTGACTCGGACCAGCGGCGGTGCCTGCTGGTGCCGCTCGGGGAACACCAGCAGCAGACGACCCGACAGGACGGGGGTGGGTGTCCGCTGCCGGGAACATCAGGGCGGCTCCAGCGACTCCAGGCTGGCGAACCACGCGCGACCCGTAGCTGTCAGACCGGCCGTGGCAACGGAGGCCACGCCACCGGCAGCGCCAGCGCGACGCGGACGACGGTCATCGGAGGGCCATCTGTACCAGCACTTCCGACAACCACCCGGCGACTCACCCGGCCAGCAACAGCATCACGCGGCGGCGCGCGCACTCACGGGGCATCGGCCACCGCCACCAGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30722-30429 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000007.1 Streptomyces hainanensis strain DSM 41900 NODE_7_length_38787_cov_82.0415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 30721 30 100.0 35 .............................. CCGCTCAGGATGTCCTGGGCCAGCCGCTCGATCAG 30656 30 100.0 35 .............................. GCGGCGTAGCGCTGGCGCAGCCCGGCGAGCAGCAG 30591 30 100.0 37 .............................. ATCGGTGCCTGCCGCAGTTCGGGCGGCGGGTCGGCGT 30524 30 100.0 36 .............................. CGCGGAGTTCGGCGACCAGGTCGCGCAGCGCGCCGG 30458 30 86.7 0 ..........................AGGT | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTCCGTCATCAACCCTGGTGGGTTCGCAAC # Left flank : GCCGCGGCCGTGCCCGGGTCAAGAGCGGTCAGAACCGCCATCAACAGGGCAGCGGACAGCACCAGAAAGCGCGCGCGAAGCACGGTCCCCCCACGAATCGTCGACATGACGACCAAGAGATTCCATGATCTCTTCAGATTTACACGAGACCCCTGTCGCACCATCAACGCACCTTCACGCCGACAAATCGGCAGTGATCACGACAACACGCCTACGGCGAGACCGGATCGTTACCCGAAAGGCGGAACCGGACGGACCTGCTGGTCATCCCGTTACGGGCGGTCGAAGCGACAGGGCCAGCAGACTCAACTGCCCAACCCTGGGAAGCTGAAGGGCATATCGCGGATCGGCCCGCGTAGCCTGGCAGGCGACAAGACAGAGACCTGCGGAGCAATCCGCCCATCGCTTTGACCTGCACTGATGCACTACCGCCGAACCGCTGCACATCCGCGCGCCAACAGGTGCGGTGGTGTAGGCCTCAGCTGCGGCCTTACCCTCGC # Right flank : GCAAGCCACGGCGATCCAAGAAGCAGGCACCAAAGAACGTCCCGAGCACATTCCGCAGCGGGGAGCACTGATCCGACTCGCTCCCCCACGCCGCGATGGCGCCCCCTACGAGGCGGGGCGCCACCGTCACCCGATCAGCAGATGCGCCGCTGAACCAGCGGCGTGACGTCCATCACACTCACCAACCGCAGCCCCCAGGTCTATTTCGCCTGGTCAGCGCCCGACTTCACCACCTGCAGCGGCAGCAGCTTCTTCCCGGTGGGTCCGATTTGTGTGGATGTGTTCATCTGCGGGCACACCCCGCAGTCGAAGCACGGCGTCCAGCGGCAGTCGTCGACCTCGGTCTCGTCGAGGGCGTCCTGCCAGTCCTCCCAGAGCCAGTCCTTGTCCAGGCCGGAGTCGAGGTGGTCCCACGGCAGGACCTCCTCGTAGGAGCGCTCGCGCGTCGTGTACCAGTCGACGTCGACGCCGAAGGGGGCCAGGGCGGTGGTGGCCGAGGT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCATCAACCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 421-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000174.1 Streptomyces hainanensis strain DSM 41900 NODE_174_length_14371_cov_60.6376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420 29 100.0 33 ............................. CCTCGTAGGTGCGGCGCTCGGCCATGTCCTCGC 358 29 100.0 32 ............................. CTGGTAGAGGACCGACCCATCCTTGCGCGCAC 297 29 100.0 32 ............................. CACACACCTGCGACCTGGCCGTTGAACTCCGG 236 29 100.0 32 ............................. GCGCTTTCCATGGCCGGCGTCAAGCTGCGCCG 175 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGGTCCCCGCCTGCGCGGGGCTGTTCCC # Left flank : GCCGCAACCACGGAGACGAGGTGGTCTGGTGACCGTCATCGTCCTGACCAACTGCCCCGTCGGCCTCCGCGGCTTCCTCACCCGCTGGCTTCTGGAGATCTCCCCCGGCGTCTTCCTCGGCTCCCCCTCGAAGCGCGTGCGGGACGAGTTGTGGGACGAGGTCCGCGCCTACTCCGGCCAGGGCCGCGCGTTGATGGCCTACCAGACCAACAACGAACAGGGCTACGCCTTCGAAACCCACGACCACGCCTGGCACCCCACCGACCGCGAAGGCCTGACCCTCATCCACCGCCCCACCGACAAATCCCGCCGCCCGACCACACCCACCGGCTGGAGCAAGGCCTCCAAACGCCGCCGCTTCGGCGGACGGTAGTGGCCCTGAACGCACCGGGACAAGAACAGGGAGCGTGACGCTTTTGCACTATTACTTCGCTATGCCGGGATTCCAAGAAGTAAGCAAAAACGGCCTCCTGTGCGACTAAACCTGCAGGTCACGACCT # Right flank : CTGGGAGTGACTCATGGGCATGCCCGCGCGGGGTTGTTCGTGGCGTGGGCCCGGGAGCTGGGCTTCAGCCACTCGGGGATCGGCGTCGGTAGCCTGGGGGGATGCGCGGGGGGAACGTACGTGCCGTGGTGGTGGCCGCCGTTGTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCCTGCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10555-10038 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000174.1 Streptomyces hainanensis strain DSM 41900 NODE_174_length_14371_cov_60.6376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10554 29 100.0 32 ............................. TGATGATCGGGCCCTGCTGCTCGATCAGCTGA 10493 29 100.0 32 ............................. GACCCCACCGCAGCACGGGAATTCATCGCGGC 10432 29 100.0 32 ............................. AGATAGCCCACGAGCGACTGAACGTCGCCCGG 10371 29 100.0 32 ............................. ATCGCCCACTCTGTCCAGGTGCTGGCCGAACG 10310 29 100.0 32 ............................. TCCCACCGTCATCGCTCTCAACCACATCCACC 10249 29 100.0 32 ............................. TCTCAACCTGGAGGGCCACCGAACCCCCACCG 10188 29 100.0 32 ............................. TCGGGCGCCCAGGGCTGCGTGCACGCCCAGTC 10127 29 100.0 32 ............................. GTCCAGCAGGTCAGACGGAAAGTCGATGTCGT 10066 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 CTGCTCCCCGCACCCGCGGGGCTGTTCCC # Left flank : ATCCATCTCGCCGAGGACGTAACGCACCCCGTCACGAACGGTGGAGCCATCCTCCACTCCCAGCAACAGGAAGTGCACCAGGGTCAGTTCATGGTGACGTTGATCGCCACTGATGCGCAGGCGCCGAGCACGTGCCGAACCGACAGCCTCACGGCCGAGGCCCCCGACACCCCCCGCACCCAGGGCACCCAGGTGCCTGGCGATGGTGTCTCGTGGCATCACCAAGACGATTTGCCGGGCCGTTGGCCCTGGCTGTGTTCGTCGCGGCGGCCGGCCTCGGCGGCTACCTCATCGGGAGCGGACAGGTCACCGGCGTGCCGCCGAAGACACCCGCACTGTCGTGCATGCGGCTAAGGTCGCGACCTGGGGCCAATACTGACGGCCACTCATCGAGCGCCAGGAGGAAGGCTGCCACGATGCGAGCTATTCCCGAAACGCGCCAATCTCATGAAGTGAGCAAAAACCGCTGCCCCACCAGCTAAACCCGCAGGTCACGACCT # Right flank : TTCTTCTCGCCCTCCTGGTTCTCGCGCCACGTCTGCTCCCCGCACCCGCGTTCGGTCACTCACAGGAGCCACCGGCACCAACCACGCCAGCCTCTGACCGAACGACCACGGCTCGGCGGAAAGGAACCGACCTTCATTCGATCACAGGCGGTCAATTTCAGGCAGATCCCGCATCTCCGCCAATCACCAGCCCTCGATGATGTCGAATGCACGCATGGATCATGAACTCCCAAGCCACCAGGGCCCCTTCGGCCGCTTGACCCTGGCCGCGCGGCGGGCGTGGGGGAAGCGTGATCGGGATACCGACGGGTGGTTGCCGTTGTGGCAACACATGGCCGACAGCGGAGCCGTCGCCGGGCGCCTGTGGAACGAGTGGGTTCCCGGCAGCGTCCGGCGGCTGGTGGCGGGCTGCCTCCCCGGCGGGGAGGCAGATGCCCGCCGGCTCGCGGTCTGGCTCGCGGCCAGCCACGACTGCGGGAAGGCCACCCCCGCCTTCGCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 14042-13281 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKI01000174.1 Streptomyces hainanensis strain DSM 41900 NODE_174_length_14371_cov_60.6376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14041 29 100.0 32 ............................. GCAAGGGGCGCATCCTCACCGAGGACGAGTTG 13980 29 100.0 32 ............................. TCGACAGCGGTAGGGCGGTAGGTAGGGCGGGG 13919 29 100.0 32 ............................. ATCCAGCGCGCCCTCGACCTCGGCATCCGCCT 13858 29 100.0 32 ............................. GCAGCGGGCTGGTAGACGGCGAGCATGATCCG 13797 29 100.0 32 ............................. AGGCAGCCGCACGGGTCGAGTCGGACCAGCTG 13736 29 100.0 32 ............................. GGCCAGTAGGCCAGCACCGCCGTCGAGGGGAT 13675 29 96.6 32 ....................A........ TCCGGGTCGCTGCCGGCCACCAGGCCGGCGGC 13614 29 100.0 32 ............................. TTGTCGAGCTTGGCCGGGCGCGTGTACGCCTT 13553 29 100.0 32 ............................. GGCAGCGGGAGGCGGCATGAGCGCCAACCGCG 13492 29 96.6 32 ..............T.............. CGGCGTCTCGCCGAGGTGCTGCCCGCCGTCTA 13431 29 96.6 32 ..............T.............. GCAGCCAGGATGTGCTTGATGTTCTGGCGGTA 13370 29 100.0 32 ............................. GCGAAGAAGCCCCCGCTCGGCCGGAGCCGAGC 13309 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.0 32 CCACTCCCCGCACCCGCGGGGCTGTTCCC # Left flank : CACCCCCTCTCCACCGGCGAACACTTCGAAGGCCTCGGCCCCACCGCCCTCCGCCGCCTCGTCCTCCCCCACGCGGGCGTCTCCATCGGCTACCGGGTCTTCCCGGACCGGGTCGAGGTCCGACTGGTGTGGCTGATAGGCCACCCGTGACCGTGCCCGGCCCGGCCCGGCCGCCGCAACCTGCCGGCCCCCAGGCCCACTTCGCCGCGAGCCCCATTTCGCCACCCAGGGGAGACAATGCCCAGAATGACCAATATTCCCGTAAGGCCCGAACCTCAGGAAGTGAGTAAAATCCACTCCCACCCCAGCTAAACCCGCAGGCCACGACC # Right flank : TCGATGTCCTTGACGGGGAATCCGTCTTCGCTCTGCTCCCCGCATCCGGGGGGCTCCGACCACCCAGCCGTCGCCGCGCCGGAGTTCGAGGTCCACGTCATCACCGGCGCTTCGGTCTGCGTTGACACGGCCCGACTCGGTGGCCAAGCTGTCCCAAAACACCACCCACGCACCGCGGACAGGCCCCTGGTAAAGCATTCGCGAGTTCAATCGCTCACTTCTTCAACGGCGGCAGCCCCTTCATCCCCTCGAACGCCTCACGCAAGTCCGAAGCCTCTGGGATCTTCCGCAGTTCTACCGCCGTGACAACCTCAAGTGCACGCCAGTGGTTGGACGGAACAACACGCCCGGACAGTATCGCCTTCTGTGCCGCGTCACACGCCTCGTCCAGCCGACCATGGGCAACCAGAGTAAGAGCCAGATCGATATTCGCCGATGCCACCCGGCGCGGCCATTTGCTGATGTCAGCCCCGGGCGCAAGGCGGGCGATGACCTCCCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACTCCCCGCACCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //