Array 1 162434-160513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPM01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162433 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162372 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162311 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162250 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162189 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162128 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162067 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162006 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 161945 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 161884 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 161823 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 161762 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 161701 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 161640 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 161579 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 161518 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161457 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161396 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161335 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161274 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161213 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161152 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161091 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161030 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 160969 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 160908 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160847 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160786 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160725 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160664 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160603 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160542 29 93.1 0 A...........T................ | A [160515] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181045-178941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPM01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181044 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 180983 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180922 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180861 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180800 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180739 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180678 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180617 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180556 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180495 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180434 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180373 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180312 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180251 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180190 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180129 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180068 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180007 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 179946 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179885 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179824 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179763 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179701 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179640 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179579 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179518 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179457 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179395 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179334 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179273 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179212 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179151 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179090 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179029 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178968 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //