Array 1 66124-58343 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVM01000003.1 Lactococcus plantarum NBRC 100936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 66123 28 100.0 33 ............................ CGGAAAAAAACCGCATTATGTAAGGAATGATAG 66062 28 100.0 33 ............................ TTGTGCGACTTTATTGAATTTGATAGAGAGTAT 66001 28 100.0 33 ............................ AGGTCTAGTGCCTTTTTTTTGTTTAATGCCACA 65940 28 100.0 33 ............................ TATCTGCGTTAGCTGACACTACTTCTTTAGCTA 65879 28 100.0 33 ............................ TCATGCGTATCATATCCGCAACGCTTGCAGTAT 65818 28 100.0 33 ............................ CAGTCGCTGCGGTTTGTGGATTGCTTATAGATT 65757 28 100.0 33 ............................ TCCACGTGACGTAATTAAATTTTAAGGAGAATA 65696 28 100.0 33 ............................ TGACAAGAAGACGCTAGCACTGTATGACAAGCT 65635 28 100.0 33 ............................ TGTACGGCACTCTGATTGGAATTCTCCAATCTG 65574 28 100.0 33 ............................ TGTTGACATAAGCGATACAGCACCGAACAAACA 65513 28 100.0 33 ............................ CACGCTTGAACAATCTATCTATGAGCAAATGAA 65452 28 100.0 33 ............................ CCGAAGAAAAAGCTCGTAAGCAAGCCAGTGAAA 65391 28 100.0 33 ............................ TATACCCAAAGACAAAATTTATAGAAATAATGT 65330 28 100.0 33 ............................ CTGGCACAAGTTCGATAAGTGGGTTTATCCATT 65269 28 100.0 33 ............................ TAGAAGTGTACAAAGTATACATTCATTTGTTGG 65208 28 100.0 33 ............................ CTAAAGCCATATTCATCCATCCTCAACTGGCAC 65147 28 100.0 33 ............................ TACACCAAAACTAAGTTAGCTAAATTAATCTGT 65086 28 100.0 33 ............................ TAACTTGATTAAGATTAGTCGTGTTTGTGGGTC 65025 28 100.0 33 ............................ TGGTGTTGTCGAGCCGACGCAGGACGAGATCGA 64964 28 100.0 33 ............................ TTCTTGTTGTGAATTTTTCGTCTAAAATTGAAT 64903 28 100.0 33 ............................ TACAGCATCAATGCTGTTTGGTTTAGTTGGTGG 64842 28 100.0 33 ............................ CGGTAGCACCGATGTTAATTGGGATGATAACGG 64781 28 100.0 33 ............................ CGCTGCATCATCCTCTGGTGTGACCTTTGCTTT 64720 28 100.0 33 ............................ TGGATCTTCTGTAAAGTAGGATGTTGAACCTGA 64659 28 100.0 33 ............................ TGGCTATACTCGTATCTCAGAAAACCAATCATG 64598 28 100.0 33 ............................ CGGCATCTGGCAGTTTGTGAGCTATCAACTAAA 64537 28 100.0 33 ............................ CTGATACTAATCAATGAAAGCGAAGTACACAAT 64476 28 100.0 33 ............................ TGTACATTGACGGCTTTCAATCAACTCACGATT 64415 28 100.0 33 ............................ CAAGTACATCTAATAACGGCTTTAACCCTGTAG 64354 28 100.0 33 ............................ TAATCTCTTGGTGGCTTACCTTCATCAGTTCCT 64293 28 100.0 33 ............................ TAAAAGTGTTGACAATATTAAACTTAAGTTGTA 64232 28 100.0 33 ............................ TTGATAACAATGAAGCTATTTCATGGTTCGATA 64171 28 100.0 33 ............................ TATCCGCTTCAGATATATCTACATCTTTGTCTA 64110 28 100.0 33 ............................ TAGTCGTATTGTTTGACACGTGCGCCAGAACTG 64049 28 100.0 33 ............................ TAATCTAAACCTTTGACTGTATCTTTGTAGCCG 63988 28 100.0 33 ............................ CATCTCGGCCAAGCTTTCAAACTCTGGCAGGTC 63927 28 100.0 33 ............................ ATGACTTTAGCGAAGTCGAAACAAGAGAAACGA 63866 28 100.0 33 ............................ TAATTGAGCCAAACGGCCTTCATTGTTAACACC 63805 28 100.0 33 ............................ AAATTGCCGCTTAAGGCATCTGCAAGCGATATC 63744 28 100.0 33 ............................ TAGCACCCCAAGGTGTCGTTTTGGTTTCGTCTG 63683 28 100.0 33 ............................ TATGATTTGTCTTCTGTCAATAATTGATGCAAA 63622 28 100.0 33 ............................ TGAAGAATGGAGAACCTTACGAGGAACAGTTGA 63561 28 100.0 33 ............................ TAATATATAAAGGTCAAAATTACTAGTTTTTAT 63500 28 100.0 33 ............................ TCAACGGTTGGGATAATCCAGAAGGCTATCAAG 63439 28 100.0 33 ............................ TAGCAATGTTAAAGCCAAGTCTGAATGGCTAAG 63378 28 100.0 33 ............................ TTCAGGCTTAAGAGATAACTCGAAACTTAGGTA 63317 28 100.0 33 ............................ TCTAAGTAATATTATTTTCTTTGAGCCAGTTTG 63256 28 100.0 33 ............................ TGCAAGACTTGACAGACAAGGACAAACAGAGTC 63195 28 100.0 33 ............................ TATTAAAGGTAAAAATGGTGTAAAGTCTTGCGG 63134 28 100.0 33 ............................ CAAAGGACACTAAAGTTATAAAAATATACAAAT 63073 28 100.0 33 ............................ TTGATAGCGACGCCTGAGTTTGCTAAGTTTGTA 63012 28 100.0 33 ............................ CTTTTTATCATTAACAATATTGAATATCCGTTC 62951 28 100.0 33 ............................ TAGATTGATTTTTCCAAGTTTTACTTCTAGAAC 62890 28 100.0 33 ............................ TACCGTTAAACCAACATCAGATCACGATTCCGA 62829 28 100.0 33 ............................ TGGATTTACTCGTATATCAGAAAATCAGGACTG 62768 28 100.0 33 ............................ CTGAGCGCTCGGTTTCTGGTATAGTAGAAACAA 62707 28 100.0 33 ............................ CATCTTAGCGTAGTTACTTGTTTCGAATTGTGT 62646 28 100.0 33 ............................ TGTTGTAGCTGAACAAATTCATCAACAATCAGA 62585 28 100.0 33 ............................ CGACATCAAACAAGCGCTAGATGAAAAGAGGGA 62524 28 100.0 33 ............................ TCTAGATAGTCATTAACATTTTTCCAGAAAATC 62463 28 100.0 33 ............................ TTGAAATGATTCAGCATCTTGCCATATGTTATC 62402 28 100.0 33 ............................ TGATCTTCTACATAAGCAACGCAACTTAAACTT 62341 28 100.0 33 ............................ TTAGCTGATGTACTAGCTTTAGGTAATGCGAGT 62280 28 100.0 33 ............................ CGAACGCATCGAAGAAATCATGGAAGAAGCAGT 62219 28 100.0 33 ............................ CTAGATGATGAAGCTAAACGATCACTAATTAAA 62158 28 100.0 33 ............................ TACACTTATGAGACTTTACCAACTCAGGAGATT 62097 28 100.0 33 ............................ TTTGGTACGTTTCTTGTGTTTGTAAATCGTAGA 62036 28 100.0 33 ............................ TAATCTTGAACAGTAAAGAGTGGGGCAGATACC 61975 28 100.0 33 ............................ CTTGACTGTATCGCCTATTTGCGTGTCTTTGTC 61914 28 100.0 33 ............................ TATCGTGCCTTTCAACGTGAAGTAGTCGCAACC 61853 28 100.0 33 ............................ CCACACCGTCTGTCATATCTTCGATAAAGTCAT 61792 28 100.0 33 ............................ TGGATTGAAAGATATTGGAAAACAATCTAATTC 61731 28 100.0 33 ............................ TGGAGATGGCTAACAAAGAAGGTTGGACAACTA 61670 28 100.0 33 ............................ CCAATTCTTCGCCAGTTCCGTAAAAGCATCCTA 61609 28 100.0 33 ............................ TGCAATCGTTGAAGATTTTGTACCATCAAGCTC 61548 28 100.0 33 ............................ TTGATAAAATATCCGCTTAGCTTGCTTCTGAGA 61487 28 100.0 33 ............................ CCCAATCTATGTTAGCTGCTACCTTTTGCTCTA 61426 28 100.0 33 ............................ TCGTGTCAACGCCCATAGGAGTGCCTATAACGA 61365 28 100.0 34 ............................ ATAGCTTTAGCTTTAGGCACTTCGACTATATAAG 61303 28 100.0 33 ............................ TAACTTCTCGCCATCTCCATCTTCAAGTGTAAA 61242 28 100.0 33 ............................ CGCCTAAGATTGCTTGGGAGTTTGAAAACATAG 61181 28 100.0 33 ............................ TGAATTATCGTGCAGATAGGATTCACGTTAAAA 61120 28 100.0 33 ............................ TATAACTTTGTCCGTCCCAATCAACGGCATAAA 61059 28 100.0 33 ............................ TTGGTAAACAATCAACGATGGTAATAGATATCT 60998 28 100.0 34 ............................ CAGTAAATAAAGATTGGTTCATTGCATTGCTTCA 60936 28 100.0 33 ............................ TTTATTTTACAGCATGATTCATAGCTGACTGAT 60875 28 100.0 33 ............................ TACTAGAAGAGCTTGGGATAACGTATCCGAAAA 60814 28 100.0 33 ............................ CGTCCAAGACTTTCTCTGTCTCATCATCGATGA 60753 28 100.0 33 ............................ TATGCGCACAGTAAACACGCAGAACGGACAAAA 60692 28 100.0 33 ............................ CCGATAACTTCGCTTAACGCATACTTCCAAGCG 60631 28 100.0 33 ............................ TACATCCGTCATAATCAAATGGGCAAGCTTTAA 60570 28 100.0 34 ............................ ATTTTATTTCTTGGATTGTACGCACGCTTCTTTT 60508 28 100.0 33 ............................ TTTCTTAGTCGTCTAATTCTATCCAACGAAAAG 60447 28 100.0 33 ............................ TTTGCACACTTAAAATCGCTCATTCTTCCACCT 60386 28 100.0 33 ............................ TAGTATTATGATGATTGCATAAAATATCAACTT 60325 28 100.0 33 ............................ TAGGAGCTTAAGGAGTTGCTACCTTAAGTAGAG 60264 28 100.0 33 ............................ TTGGAGAAAAACGCTTATTCGCTTGGCTTAGAG 60203 28 100.0 33 ............................ CTTGCATGAGTATGCCTAAATCCGTGAATTGTG 60142 28 100.0 33 ............................ TAAACTTCCAGACATTTTTCCTCCTTTTAAATA 60081 28 100.0 33 ............................ CTTCCACCGCCAAATACACTTCTAGGGTCAGAG 60020 28 100.0 33 ............................ CTGTCGCTATTGAACTAGTAGCGTTAGATACTT 59959 28 100.0 33 ............................ TTGAATTCGCCCCTATCCTACCAGCACTTAGTG 59898 28 100.0 33 ............................ CAGATATTTTGCAGAAGCTAATAACAGTGCAAT 59837 28 100.0 33 ............................ TGGTATAGATATGAGAGGTAGTAATATAATCGA 59776 28 100.0 33 ............................ TGTTCTCTTCTTGTTTTTCCTTACTTTGTAAGT 59715 28 100.0 33 ............................ TTAGCCCATCTTCGCCTATGTTTTTGTAAGGAA 59654 28 100.0 33 ............................ CCTGCTTCAAGTTCGTTCATGTTGTCATGTTTA 59593 28 100.0 33 ............................ TCGCGTCAACTTATTATGGTCGCGGACGTTACA 59532 28 100.0 33 ............................ TTAGCTAGTTCTATAATCTCCGATATGGTAACA 59471 28 100.0 33 ............................ TAGTTATTTACAAAATTTTCAAATTGTGAACCT 59410 28 100.0 33 ............................ TGCGAACACAGCAGAAGTATTAAAAATGTTAAA 59349 28 100.0 33 ............................ TAATTCCAAGGGAGTATTTACCAAAAGATTTAA 59288 28 100.0 33 ............................ TGAATTCGACTAGGGTTATTAATGTTTGTGAAA 59227 28 100.0 33 ............................ TGAACACAATAAAATGCTTGAATATCTTGAACT 59166 28 100.0 34 ............................ ACATCTCATCTAGTAGAAAAGGCGACGGCACTAG 59104 28 100.0 33 ............................ TATCTTATCATTTGCTCTCTATCATTTTGAGAG 59043 28 100.0 33 ............................ TTGCTTGATCTAAAGATTCTAAAACAGCTTGAT 58982 28 100.0 33 ............................ TGTTGTCATGAAATTTTTTCTCTTTCTTTATTC 58921 28 100.0 33 ............................ TTCGCTAGAAGATCGGGCATACCTCCAACTACT 58860 28 96.4 33 ...............A............ TGTCTTTAAACGTCCGTTCTAGGCCGTATCGGT 58799 28 100.0 33 ............................ TTGCTTTTCTGACTAGTCCAATAGGTTTAGTTA 58738 28 100.0 33 ............................ TTTATACAAATAAATTTATAGTAAAACAAGATA 58677 28 100.0 34 ............................ CCCGCTGAGTAAGCTTTATTAAAATGTTGGAATA 58615 28 100.0 33 ............................ CATCAATGCATCAAATATAACTACAGGTATATT 58554 28 100.0 33 ............................ TAAAGCACTACGTGAAAAAATTCAATCTTTAGA 58493 28 100.0 33 ............................ CGTCCATCGCATTAACATCATTCTGAACAGTTG 58432 28 96.4 33 .............T.............. CGAAGCAAAGAAACGCAGTGCAGTAGCTTATAT G [58410] 58370 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================== ================== 128 28 99.9 33 CTTTTACCCGCACCTGCGGGGGTGATCC # Left flank : ACAGAAATAGATGAAATAATTGAAATTGGTGCAGTACGCGTTACAGGTAGTCAGCTTTTGGAATTTCATGTATTGATAAAATGTGATAAAAATGTTCCTGCATTTATAACTGATTTAACAGGGATAGATAATGATCTCCTATTAAAATATGGTATTGAGGTAAAAGATGCTATTACATCTTTTATGGATTTCGTAAAAGATTCTCCCCTAGTAGGTTACAAAGTTGATTTTGATAGAACTTTTTTACAAACTATGACAAAAATATACTGCTTACCGAAATTTGATAACCAGTTTATAGATTTATTGACTTTTGTAAAGAAAGAAAAACTGTTTTTAACAAATTATAAGCTTCAAACGGTACTAAAAGCGTATGGTATACTAGATAAAGTTCCTCATAGGGCATTATCAGATGCGAAGCTATCAGCACAATTAGCAAGTAAAGTGAATGGATTTTTGATTAGTATGAGAAAGAAACGTTGATTTTTAGGGGTTTTTTTAGT # Right flank : TGAATTTGATTTATACGACGCAAAAGGCTTTAACTTTTCTCCGCAAATACAGAATAGACAAGTTCTCGCCTATTTTCAAGATAGTAGATTCATTTTTATGTCTATTAGCAGAATGAGTCAGTGTCACTAATTTTGAAATAACAAATTAAATCACAAAAGATAAAAAGACTGTGTGTACAAACATGACACGCAGTCCTTTTTTATTGCCGTAAATTTTGTTAAACTATAGAAAGTGATGATAAAAAAAGCGGAGAATAAGGAATAGATGAGTATCTTAACAGTACAAAAATTAAGTCATGGCTTCGGAGATCGAGCTATTTTCGATGATGTTAACTTTCGATTATTAAAAGGCGAACATATTGGCTTTGTCGGTGCAAATGGTGAAGGTAAATCTACTTTCATGAATATCATAACAGGTGCATTGCAACCAGATGAAGGAAAAATTACTTGGTCGACTAAGCATCGTGTGGGCTATATGGACCAACACGCTGCGCTTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTACCCGCACCTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //