Array 1 13725-12284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCZ01000016.1 Mycobacterium tuberculosis strain Bir 41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 13724 37 97.3 36 N.................................... GGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAG 13651 37 100.0 37 ..................................... ATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAA 13577 37 100.0 36 ..................................... CGGACTTGATCGACGCGAACCTGTCTGACGCGAACC 13504 37 100.0 39 ..................................... CTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCA 13428 37 100.0 37 ..................................... CACCAGGATCAGCGCCAAGCCAGTTAGCGCAGTCAAA 13354 37 100.0 37 ..................................... CAGCGCAGACGGCAGCCCCGAGTACTCGCTCTCCTCA 13280 37 100.0 40 ..................................... CGCCCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCT 13203 37 100.0 34 ..................................... ATGCGAATCCGCTGTCAGCACATGGGATTCCGAA 13132 37 100.0 38 ..................................... CCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCAAA 13057 37 100.0 36 ..................................... AGGCTGAAATTGAAGCCGGAAATGACGACGCATTTA 12984 37 100.0 33 ..................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCG 12914 37 100.0 36 ..................................... CTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACG 12841 37 100.0 40 ..................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAT 12764 37 100.0 37 ..................................... CATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGAAA 12690 37 100.0 38 ..................................... CTGATGATTGGTCGGCGTATGACGTGCTACTGAGGTGT 12615 37 100.0 35 ..................................... GCGTTGTGGTCGTGTCGTGGAGCCTGTATTTCGCT 12543 37 100.0 35 ..................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAA 12471 37 97.3 40 A.................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAT 12394 37 97.3 37 G.................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTA 12320 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 99.5 37 CGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : CCTCTCGGGGTTTTGGGTCTGACGACAGGGCACTGGACCTGTATGAGGCACAGATGGCGTACTCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGAGGACATGGAGCAGTAGCGTGGCTGTGGTGTGGCGGGCGATATGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGAAAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCCGACGACCCCGATAGTCGCGCTCGTCCATGTCCCACCATGAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTATGGACAATTCGTCCAGCGTGTGGTAACAATGCCTGCTGATGATGTCAAAAGAACACAAACTCCTCTGCGCTGACAAGCCGTCCCCTTCCGTAGAACGTAACTGCCGCAACACCTCTTATCTTATAGATCCGGATGTTGTCGCAGTCGATGGCGAAGCGGTCGATACGTGCAACTAGTTTCGCGAGCTGGCCCTTCGTCAGCATCGCTTCGAATGCGGACTCTTGGACGCGATAGCCAAACCCGGCCAGGATCTTCGCAAGTGAAGCCCGCCGCCGGTTGTCGCTGATGTCGTATATTACGAGGACGAACATCTTGCCTATAGTGCCGCTGGACTCGTCCACTTTGAGCGGGAGATTGAAGTACTCCTCACGGCTGCGAGTGGGCATTTAGGCTCCGGATGGCTCGGAGGTGATATCGATATCGACGAGCCGCGACGGGTGCCCGGCTTCGATAACACGCACGAGGCTTTGCAGTTGCAAGTCGAGGGCGTACTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 13975-14832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCZ01000016.1 Mycobacterium tuberculosis strain Bir 41, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 13975 37 94.6 37 ......G.............................T TTTCCCCGGCGTTTAGCGATCACAACACCAACTAATG 14049 37 100.0 39 ..................................... CATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 14125 37 97.3 37 ...C................................. AGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 14199 37 100.0 37 ..................................... TTTCCCCGGCGTTTAGCGATCACAACACCAACTAATG 14273 37 100.0 39 ..................................... CGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 14349 37 100.0 36 ..................................... TTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 14422 37 100.0 37 ..................................... TTTCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 14496 37 94.6 39 .........................A..........T CGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 14572 37 100.0 37 ..................................... TTTCCCCGGCGTTTAGCGATCACAACACCAACTAATG 14646 37 100.0 39 ..................................... CTACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGA 14722 37 94.6 37 ..................A.................T TGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 14796 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 98.4 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACG # Left flank : GACCCAAAACCCCGAGAGGGGACGGAAACGGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCATGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTCATGGTGGGACATGGACGAGCGCGACTATCGGG # Right flank : GACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //