Array 1 234152-234297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012706.1 Bacteroides fragilis strain S14 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 234152 24 100.0 37 ........................ AACAAAAATACTAAGTATTTGTTTGATAAGCAAGGAA 234213 24 100.0 37 ........................ GCTTTTTGTGGCTTGAGTTATGTACCTTCATCATGAA 234274 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 ATTCCCAATATATTGTGAATTTGA # Left flank : CGTGTCGGTATGTGCTGTAGCTAATAAAATACCAAAATCATCTTTTTCATCAATCTGCAATAATCTTGCCTGAACGATGCGGTTGTGCCCTTCTGACAGCATGTTGGCAAAAAAAGGAAATAGATAATGGGAAGTATATTCCTGTTGTTGTTTTGTCAATGTCAGGCTTATGGAGGGCTTTGATGGATCATTGAAATATTCGTCATCATAGCGAAATTTATATTCGTTAGAAGATAATTCCGTAATAATGCCTACCCGTTCTTTATTCAAGTATACGACTCCTTGTCTCATAGATGTCCCTCCTTATTTTTAATTTTCAGAGAAAGTTCTAATCCTAATACCTCCAATATGGCATAGAGCTTTTGAAAATTAATATTTATTTCTCCATTTTCAATTTTTGTTATAGTATTGATACTGATTTGTGCTAAATCGGCAAGTGTTTGCTGATTTATACCCAACATTTTTCTTCGTTGGCGAATCTGTATTCCAATTTGTTTCAT # Right flank : ATTACGGCTATTTGTACTTTTGATTTTAGAATGACAGAGATTTCTTTTTGTTTGTAGAGTGTTTCTCAATTAACATTGTTAACGCCATTTCTCCGTTATTTTATTCTTGTGTGCAAATAACAAGCCTTTTGCATTGAAAACACTTGCTATTTGCATTTAAAGAACAAGCTTTAACGTAGCGTTAAAACAAAGCTTTGGGCGAGAGAAATCTTGTGCTTTAAAAACACTGTGTTTTAGTTCGTTAAGCACACTTTTTACTTCTTTGTTTCACTGAATCCCTTTCTGGTCAAAAGCCTGTATACTTGCTTTTTGGTCAACTACAAATAGGGGACTGACACTCTCTGCTACCTTCTTTTCGTCTTGTTTAGCGCCGCTACCAGGTATCTTCCTTTGGCTCCGATGTCGCTCCAGCAAGTGTTGGCAATCAGTTTCCATACCGTCGTTCCCTTCCTCCCATAGTCCGACAGCCTGAGTATGGAGTTTACTTCCCCGGTGTCGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCAATATATTGTGAATTTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1986558-1984987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012706.1 Bacteroides fragilis strain S14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1986557 35 100.0 33 ................................... AAAAAGACAGTGATAATTTGTACCGGCATTCTG 1986489 35 100.0 33 ................................... TGCTAAAGACGGAACAATATATTATGCTCCGCA 1986421 35 100.0 34 ................................... TAGGTTATGCACTCGTCATAAGGCAACCATTGTT 1986352 35 100.0 36 ................................... GAAGGAAACGGCGCCGCTGGATATAAAACTGGCAGA 1986281 35 100.0 38 ................................... ATTTTATTGCCAATAATTTGGTTGATAAAAGCTGTTTT 1986208 35 100.0 36 ................................... TCACATTGGGAGATAACCCTACGGTTATGTGCCCGG 1986137 35 100.0 37 ................................... ATATGGCATATCGTGATGTCAAATACTCTTGTGTTTC 1986065 35 100.0 34 ................................... AAGACCGTGAAATGGAACATCTGATGGCACTGAC 1985996 35 100.0 37 ................................... TATTCTTTGATGCCGTGATTTATCACACGATTAAACC 1985924 35 100.0 36 ................................... TTATACATCGCCAATGAAGAAGAACAACAGTTCTAC 1985853 35 100.0 36 ................................... AGCTTTAGCAACGCTAAAAGAATTAAATGTTTGTGT 1985782 35 100.0 35 ................................... CCTCTTTTACAAGAAAATCAGAATGCAATTCTGGA 1985712 35 100.0 33 ................................... AGACGTATAACATCTCCAGACGCATTGTCACTT 1985644 35 100.0 34 ................................... AAATTACAACGTCACTCTAGCAGCAAGCGTAAGC 1985575 35 100.0 34 ................................... GAAACCCGACATCCTCTTTTGAAAGCTCAGTTTC 1985506 35 100.0 36 ................................... CCAAAAATGATGAAATCATTGCCAAGCGCAGTGGTT 1985435 35 100.0 35 ................................... AAAATAAATGCGCAGGAAAATATCCGCGCCGGTGT 1985365 35 100.0 34 ................................... CCATGAATACAATTCGAGGAGTTCCGTTTATTGC 1985296 35 100.0 35 ................................... AGGAAGTTTCTGAAGAGCCTGTACCGCCTGCTAAA 1985226 35 100.0 32 ................................... TTTTTCTCCCGTTCAGAATCTTCAATATTTTC 1985159 35 100.0 32 ................................... CAATCGGTACGGCTTTAGGTCTTGGAATTCAA 1985092 35 100.0 36 ................................... TAGAGGCTAGTTATGTTATGAACGGCTACGCCTATT 1985021 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 23 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 2133852-2133308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012706.1 Bacteroides fragilis strain S14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2133851 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 2133788 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 2133723 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 2133657 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 2133594 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 2133531 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 2133466 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 2133403 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 2133337 29 93.1 0 .........................G.C. | A [2133313] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 3758696-3760579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012706.1 Bacteroides fragilis strain S14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3758696 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 3758773 47 100.0 30 ............................................... TTTAAAGAACGAAAAAAACGAGTGGATCAC 3758850 47 100.0 30 ............................................... AGTTCTTCGCTGGTTGCCGCACTGTCTGCC 3758927 47 100.0 29 ............................................... GCTGATCATAATAAGCCTGTTGAAGAGTC 3759003 47 100.0 29 ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 3759079 47 100.0 30 ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 3759156 47 100.0 30 ............................................... GAAATAATTAGTAGAAGAGAATATACCACT 3759233 47 100.0 30 ............................................... GTGTTCAGATATTCAAGGCAAGTGTCTGAA 3759310 47 100.0 29 ............................................... GGTGTACTTGACAAAGGTAGGCAGGCAGG 3759386 47 100.0 30 ............................................... TCAATATAGCGGCCAAATTGTCCCTTCGGT 3759463 47 100.0 29 ............................................... GTTCCCTGTCTGCGAACATGAAACGCCGT 3759539 47 100.0 30 ............................................... TTTGAGATTCAGAACTCGCCCATTCATTCT 3759616 47 100.0 29 ............................................... GTTTGATGATAATAAAGGATATTCATCTA 3759692 47 100.0 29 ............................................... TTTTGCAAAGCCTCAGCGGCACGGAGTTG 3759768 47 100.0 29 ............................................... TCTGGATTCGTCTCTCCATAACCAAGATA 3759844 47 100.0 30 ............................................... TTCCATATCTTATTATTCCACGACTCGCGA 3759921 47 100.0 30 ............................................... GTACTAACAGATTCTTCCACGGCTTTGATA 3759998 47 100.0 29 ............................................... GAAAAAGCTAATTGGCTTATCAAAAAATA 3760074 47 100.0 29 ............................................... AGTATCAGCCTGAGTATTACCAAGAGCAG 3760150 47 100.0 29 ............................................... AAGCCTCAAAAAAGACAGGTTCTTGTGTA 3760226 47 100.0 30 ............................................... TTTCTGCTGCTGATTGGATGCCTATTACTA 3760303 47 100.0 30 ............................................... TAGAACCGTCACGAATCAAATTCCAATATT 3760380 47 100.0 29 ............................................... CACATAATCCAACAAAGGGGTAGCATGAT 3760456 47 100.0 30 ............................................... CAAAGCGCCAACTCTTAAGAACAAACTGTC 3760533 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 25 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //