Array 1 8609-7199 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKU01000004.1 Vibrio paracholerae strain 2017V-1110 2017V_1110_contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8608 28 100.0 32 ............................ TCAACCAGACCCAGAACACAATCCCTCTGACC 8548 28 100.0 32 ............................ TCTTATAAGGAGATACATCATGGCTGATATCT 8488 28 100.0 32 ............................ AACAGGTGACAGGGTAGCACCTCAGCAAATTT 8428 28 100.0 32 ............................ TTTCAACTCGCATCACTTTGCGGCGCACGCTG 8368 28 100.0 32 ............................ CCCATCGCCTGAACAACTTTTAATTTCGAGGC 8308 28 100.0 32 ............................ AGCGCCAAGCGGTGACAGGTTGCGCATGATTG 8248 28 100.0 33 ............................ CGCTTGGCGCTGGCTGCATCATCCATACACCCG 8187 28 100.0 32 ............................ TTATCAATTGTTCAAATATCTAGAGGGTAGAA 8127 28 100.0 32 ............................ TAGAGGCAGAAAACGAGAGCTTTGAGTTTTTC 8067 28 100.0 32 ............................ ATACACGGAGCCCTTAACCGCTGCGTCAAAGT 8007 28 100.0 32 ............................ GTTAACCTTGAAAAAGTTAAAACGCACTGCGC 7947 28 100.0 32 ............................ TCTGGATAAACAGCGCGATCATGTAAAACCGT 7887 28 100.0 32 ............................ TTGGGGCGGCGAGAAAGTGACACGCTATAGCG 7827 28 100.0 32 ............................ TTTTGAATGGATACCGCCATTTTGCCCATTTG 7767 28 100.0 32 ............................ TCGACAATACGAGCGTCAGAGTCAAGACCTGT 7707 28 100.0 33 ............................ AATGGGAGTCACCAAATCTGATGACCATGTTAG 7646 28 100.0 32 ............................ ACACTTATTTAACTGAGCTTTACTTTGAACCC 7586 28 100.0 32 ............................ TGCCGCAGTACCACGCACCACGCAGCCGCGCA 7526 28 100.0 32 ............................ ATAGGTCATTAGCATCTTTTCGATAGCGCCAT 7466 28 100.0 32 ............................ CAGAATCAAAGCCGCTATGAGCAAGGAAGCGA 7406 28 100.0 32 ............................ TGACCGTGGTCGTACTTTCTATGTAGGTGCTC 7346 28 100.0 32 ............................ GATGATTGTGTGCTCTGTGTTGCTTACGTTCA 7286 28 100.0 32 ............................ TTACACACAAGAGCACAATTGCCCCGACTGCG 7226 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTTGATTGCTACGGCTTGAGTAGCAAAGCGAATGGACAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TTTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGTCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGGTCTCCTTATTTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGGGCAAAGCGCACCACTTGATGGGTTTCCCCTAGGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGAGAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 192-1479 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKU01000057.1 Vibrio paracholerae strain 2017V-1110 2017V_1110_contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 192 28 100.0 32 ............................ ACCTAGTGCAGCCAGTCCGATTTTTTTGGGGC 252 28 100.0 32 ............................ ATCAGCGACATTAAAACCAAAACCAAGTTCAG 312 28 100.0 32 ............................ TTGCGCGCTTGGTATCCACTTCGGCGCGAAAA 372 28 100.0 32 ............................ CGGTCAAAACCGGATACTCAAGCATTACCCTT 432 28 100.0 32 ............................ GTTAGCCTCCCATTGTCGTTTCGCCGATTCTA 492 28 100.0 32 ............................ TAAAAGCCCGCAAGGGTGGCGCTCAAGAGGTT 552 28 100.0 32 ............................ TGTTCTTTGCGGTGCTCCACCAACTGCATTAA 612 28 100.0 32 ............................ TTTCACCCATCGATTCAACTGATGGCAAGCCA 672 28 100.0 32 ............................ GCATAACCAAGGAAGTGTGTCCCGCCCTCGTC 732 28 100.0 32 ............................ AGCCATTAACGCTTTAACCATGTCAGTGTTAA 792 28 100.0 32 ............................ TATTTATGCGCTCCGATTTCGAGCTTGAGACA 852 28 100.0 32 ............................ ATCAAATAGCGATGGGCAGCTCACAGTTAAGC 912 28 100.0 32 ............................ CTCAATTGCAACCATAGACAGCGTGCAAATTG 972 28 100.0 32 ............................ AAGCCAATCTGGCGAATGGCAATCACGGCTAT 1032 28 100.0 32 ............................ GCCATCAAAAAAGGATAGACCTTCTGTATTTT 1092 28 100.0 32 ............................ ACGTCGATGATAAGCTCATTACTCTCAGTGAG 1152 28 100.0 32 ............................ TTGACGCAAAGAACAGCAAAGGAAGCTACAGA 1212 28 100.0 32 ............................ ACGCGCCAATCGGATAAAGGCTTTCAGTTCTT 1272 28 100.0 32 ............................ GATTCAATCAGCGCCGCAAATGCGGACAGTAG 1332 28 100.0 32 ............................ TGTCGCATTCAGAAACCGCACACAGAAGCGCT 1392 28 100.0 32 ............................ ATTTGGAAGCGCTGGCCTTTCTGGGGCTCTCT 1452 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGGGTCTAGTGGTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTGCCCATCTTTTTTCGTTGATTTTTAAGTTGTTGATTTATATCAACAATAAATCGAATAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTAATAG # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTACGGCTGTTGGGTTTGAGTTTAGTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTGGAATCATCAAAATCCAAACTCAGTCGTTCTGAAAAAAAATCAGCTTTCAGCATTCAATTTGCACAGTTTGGCTTTCGGGGTTTGCCTGATGAATATTTGGTAGAAAGTGTTGAAAGTTCCGTGGTTTCAAAGTCGCTGAAAACTAGCAAGCCTCGATGCTTCAACGTTGTTGGATGTTCAACACGGAAAGTTTCGTTTCACAAAGGCTGCATTGTCGCTGAAATCGCGCTTTCTTTGTCGGAAATTCGGTAAGTTGCCAACTTAACCTTGATCGCTGCGAGTTTTAGCTGCTCACTTCACAGCTTTTGGTGTTGGACGTGTGTTTGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 995-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKU01000076.1 Vibrio paracholerae strain 2017V-1110 2017V_1110_contig76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 994 28 100.0 32 ............................ ACAGCCATTTGGACGGGCGCACAATGGGCGCT 934 28 100.0 32 ............................ GTCATAACTGCGAACTACTTCCCCATTTTTCC 874 28 100.0 32 ............................ TCGCCACTCTATTCCTGCTGCATCGACTGCAT 814 28 100.0 32 ............................ GTCCAGCAATCACGAGCGTGACTAGAAAGAAA 754 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTGTTCTGCCGAATAGGCAGCCAAGAAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGAAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGCCATCGATAGTTTTCATCAAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCAGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAATGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : AGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGCCCCTTTCCTGCTTAGTGCGATGACTCAGCAATAGATTACTCTGCTGAGTTTGCTATACGTGAGGTTATGGCAGATACCAGAACGCTGTTACATGGAATCTCCCATTTTCGAACATCACACCGTCTATGCTTAGTAGCCTTACTTTTGCATAACAATTCGCTTAGCTAATCACCTACTCTAAAAGAAGTGGTTCAGACAAAGCCTTTCATAGAAATTGTTCTTCAGCTTATGTGCTTTTATCTAAATTTGCTTGGCACTGTAAGTGTTTAATAAACATCGGAATCTTTTTCGCCAAGTGCTTTCGGGAAGAATAAAAAGCATACAGTACTAAATCATCAGGCTCATACT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //