Array 1 115687-111623 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSQ01000020.1 Eikenella halliae strain NML130454 Eiksp_contig000020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 115686 33 97.0 36 ................................T CCAATATCGAGGCAACGTGCGGTTCGACCTTCATGG 115617 33 97.0 33 ................................C TGATGGTATTTAGCGCCCTTAATCGCCGTTAGG 115551 33 97.0 34 ................................T AAACAAATGCAAGGCGGCGTAGAAAGCCAGCCCA 115484 33 97.0 33 ................................T TCGGCGGCTCATCCGCCGTTTTCGGCGCATCAG 115418 33 97.0 32 ................................G AGGGCGAGACGGCGGTGCATCTCTTCGATTTC 115353 33 97.0 34 ................................G AGAGCAAATACGAAGCGCAGGAAATCTAAAGGAA 115286 33 97.0 34 ................................G CTGGTCGCCGAACAGGCAACGCTGGTCTCGCTTG 115219 33 97.0 33 ................................C AGCCAGGCGGCGAGGTCGGAAACGTTTACAAAA 115153 33 97.0 34 ................................C ATGTATTACCAACTGCCAACCTATCCCAACATAA 115086 33 97.0 33 ................................G CCGCCTTCGGCGGGTGGGATGCTGCCTGCATTG 115020 33 100.0 33 ................................. TCACACAGTTTTATTAGTAGGCTGGGTAGCTGA 114954 33 97.0 34 ................................T GCCGTGGCGGCCGGTGGGATGCCCGAATAGGGGT 114887 33 100.0 32 ................................. GCAACCTAGCCAGCTGCCAATCCTGCCCGGAA 114822 33 97.0 32 ................................G TTCATTTTTTCGCTCCTCGGCATGGGGCAGGC 114757 33 97.0 33 ................................T CTCACCCAAACCGCTAAACCCTCCTGCCCCTCC 114691 33 100.0 34 ................................. GCGCGATTTGGCCGAAGGTGGCGTTGCTGCCGGA 114624 33 97.0 32 ................................G CGGCGGACAGTTTGGCAAACAAGGACATCAGC 114559 33 97.0 32 ................................T TCCGGCAGGGTGATAAACGGGGTTTCGCCGAC 114494 33 97.0 34 ................................T TCGCCGGTGTACGGGTTCTCTCCAATGTCCACGG 114427 33 97.0 33 ................................C AGCTTTTGCCGCATGGTTTCAAACTGCCGCTGC 114361 33 100.0 33 ................................. ATACGGGGTCGGGATTGGGCAGATAGCCGCCGA 114295 33 97.0 34 ................................C GACTCATTTGATGGGTAGCGAGCCAGTAAAAGCG 114228 33 97.0 34 ................................G CAAATGATGGCGCGGCGGTATTTGTCGGCCAATC 114161 33 100.0 32 ................................. GGTGGTTTGGCTGGGGTCGTAGTGATAACTGG 114096 33 97.0 34 ................................C CGCCTGTTATCGGGGTGCAATACTCGCTGCAGGA 114029 33 97.0 32 ................................T AAGGAGATGTCTTGTACAAAGTAGCCATCTTC 113964 33 97.0 32 ................................T CCAGGCGCTCGGCGGTGGAGCGGATATTGGCG 113899 33 100.0 32 ................................. GCGCTGGGTCGGAACGGATCATGTCCCACGCC 113834 33 97.0 33 ................................G CTGCCGCTGTGGACGGGGCTTACCAAGTTGCCG 113768 33 100.0 33 ................................. GGTAGCCTTAAGAGGCCGTCAAAGTTTTATCCA 113702 33 97.0 32 ................................G CTGCGGTGGAAATCAGCTGGCAGCAGGTGGAC 113637 33 100.0 32 ................................. ATACACGGCCGCAGGCGACATTCTGAATTTAC 113572 33 100.0 33 ................................. GCACCGCCTGCAGCATTTCAGGCTGCCATTGCC 113506 33 100.0 32 ................................. TCTTAGGTTTAATCAACGTTTAAAGGCTTTTC 113441 33 100.0 33 ................................. GGTAGTCTATCCTCCACGCTTATCCATTCGGAT 113375 33 97.0 33 ................................G CCTACCGCGTTCTTGACGCTCAATACTTCGGAG 113309 33 100.0 33 ................................. ATGGAGCCAACCCTGCCGCAAAAAGGGCTGGCA 113243 33 100.0 35 ................................. AAGGCACGATTGAAGGCCGCGAATTTGACACCTGC 113175 33 97.0 33 ................................G GCGTGTGAGAGGGATTTCAGGCTGCCTGAAACA 113109 33 93.9 33 .....T..........................T ATATCGTGGATCAGCCATTCGCCGTGCTCACGG 113043 33 97.0 32 ................................T TTTTCGGATTTCCCGCTGTTCCCGCAGCGGGA 112978 33 100.0 33 ................................. ACCTTTGAGCGGAAAGATTGAAAACTGTATGAA 112912 33 100.0 34 ................................. GGCAGCCATTCGGCGGCATGGGCGGTGGGCAGCA 112845 33 100.0 34 ................................. ATACACAGCCGCCGTGGCGGCTGAAACAACGGGG 112778 33 100.0 33 ................................. TCCACGATCACCACCATGTTTTTAAATCGCCGC 112712 33 100.0 32 ................................. GGCGCTCTCGCCGAAATTGGCCGACGGCATTT 112647 33 97.0 34 ................................T ATCCGTGTGCCTATCCAACGCATCACCGGCACGG 112580 33 97.0 33 ................................G CTTCTGCTGGCGGCGGCGCTGCAACGAGGGCGC 112514 33 100.0 32 ................................. CCACGTCGCCTGCTATCCAGCGGCGATTTTTT 112449 33 97.0 32 ................................T CTGCGGATTTCTTCAATCGATTTCATGCTGCA 112384 33 97.0 34 ................................G CTGCGGATGCCGTGGCTGCGGCTAATAGCAAAAC 112317 33 97.0 34 ................................G CTGCGGATGCCGTGGCTGCGGCTGATGGTAAAAC 112250 33 97.0 33 ................................C GGAATCCAGCCGGCCAGCCGCCTTTTTAAGTCG 112184 33 97.0 32 ................................C ACCATGTGCGCATAGGGCACATAGCCTTTGTT 112119 33 100.0 33 ................................. ATCGTATATTTCAATTTTTGGCTATTCATAGCC 112053 33 97.0 33 ................................C GCGCAAGGCGGAGGCGGAAGCCTGGGCGGCGAA 111987 33 97.0 34 ................................C ATGCGGTATAAAACATCAATGGCTTCCGCGCCTA 111920 33 100.0 34 ................................. TGGGTATCTAAGTTTTCGCAAAACGTGTAGGGCA 111853 33 97.0 33 ................................G ATGCAGGCATATAGGATGAGTGAGCCATAGCGG 111787 33 97.0 33 ................................C GGCCTGCCCTCGCCCGATGTGGTGCGTGCCGTG 111721 33 90.9 33 ............T..........C........G GCGTAGTGTTTACCGTGTGCCATGTCGCCTACC 111655 33 84.8 0 C......................CA..A....G | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 97.7 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : AAAACCGCGAGGCATGACATGCTGATGCTGATTACATACGATATTTCGCTAGAAGACATAGAAGGGCAGACAAGGCTGAGGCGCATAGTGAAATTGTGCCTAGACTATGGTGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGTTTTTACCACTTGGGCAGCAAATGGCGGCGGAAAGTGGAACACTATGGCGCGAAACCAGCGGTAGATGTGTTTAAAGATACGTTGATTGTGTGAATCGCCAACTTATGGTTCTCATGAAAATGCGGTAGGGTTGGCGAATTGAATTGTTCTTTAACAATCAGAATATTGTAAACGTGGGTATAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGGAAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGGGAGGCT # Right flank : GTACGGGCGGTGGCGATGTGCCCCGCCCAAGCCCCTCATATTTGATTTAATGCAAACAAACCCGGCATCAGCAATACCGACTAACTCAATGTTATACCCTATCCGTTACGTTATACCAAATTATAAATTTATATAAATCAACAAATTACTTGCAATCAATATCCGTTTCCACTATCATTGCCCCATCTGTAAACACTTCCCGAAGAAAGGAAACAAAATGAGCAATTGTCATACCCATGCCAACCACCAACACGTTCACGGCGAAGGCTGCGGTCACACCGCCGTCAAACACGGCGACCACATCGACTACATCCACGACGGCCACCTGCACCACGAACACAACGGCCACTACGACGAACACAGCCTTGATGTAAACGCCACCAACCCCGACGGCTGCCACCCTGTGCAAACCTGTGCCGGCCATGTTCACGGAGAAGGCTGCGGCCACGAAGCCGTGCCGCACGGCGACCACACCGACTACATCGTAAACGGCCGCCTGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 122332-122629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSQ01000020.1 Eikenella halliae strain NML130454 Eiksp_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 122332 33 84.8 34 C.TC......C.......T.............. CAGCAGAAATCGCGGTGGGACTGCCGGTAGATGC 122399 33 97.0 33 ................................C TTATCAAACAAATGCCTATTTGCGCACAATACG 122465 33 97.0 33 ................................T GGCCGGTTTTGCCGTGGTTATCCCCGCCATCAT 122531 33 97.0 33 ................................A CGTAGTTTTGGCATTGCTTGGTAGGCACGTCTA 122597 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 95.2 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACG # Left flank : CATCGATTATGCCCGCCAAGGTGAATCCCGTGATTCCCGAAGTGGTGAACCAAGTTTGCTTCAAAGTAATCGGCAACGACACCACCATCACCTTCGCCGCCGAAGCCGGCCAGCTCCAGCTCAACGTGATGGAGCCGGTTATCGCGCAATCCATGTTTGAAAGCATCTCGCTTTTAGGCAATGCCGCCGTTACACTGGCCGACAAATGCGTAAGCGGCATCACGGTAAACCGCGAAATCTGCGAACGCTACGTCTTCAACTCCATCGGCCTGGTCACCTATCTCAACCCCTATATCGGCCACGAAAACGGCGACCTGGTGGGCAAAATCTGTGCCCAAACCGGCAAAACCGTGCGCGAAGTGGTGCTGGAGCGCCAGCTTTTGAGCGAAGCAGAGCTCGACCGCATCCTGTCGCCACAAAACTTGGCCAATCCGCATTTATAAGCTTGAATTGAAACAGGCAAAAGGCTACCTGAAAACCGATGGCTGGTTTTCAGGTAG # Right flank : GGATGGTAGTTTTACCATCAGCCGCAGCCATGACCCAGCCACCTTCAGGTAGCAATAAAAATCCCGCAAGTTTTAAACCATGCGGGATGTTATTAATCTTTGGTGCCCAGGAGAAGACTCGAACTTCCACACCCGTGAGGATACCAGCACCTGAAGCTGGCGCGTCTACCAATTCCGCCACCTGGGCGAGCAATTTCCGTTTCGATTTCAATTAAAGCAAGTTGTGGTGCCCAGGAGAAGACTCGAACTTCCACACCCGTGAGGATACCAGCACCTGAAGCTGGCGCGTCTACCAATTCCGCCACCTGGGCTTTGCTTTAATCGAACTTTGCGGTAAAGTGCATTGCTCTTTATGCAAGAAACGCGCATTATAGCGCCAATTTTCCACTTGTCAATTTATATATGAAGAAGAAAACCTCGCTCCGCCTGCAAGACCCTTATCTGCAGCGGGAAACGCAACGCTACGAACACCCCCTGCCCAGCCGCGAATGGATTACCGA # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //