Array 1 34-1187 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJM01000003.1 Sulfolobus islandicus M.16.13 contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 34 24 100.0 40 ........................ ATTATCCTCATATCATTAATTAATTTTCTATACTGGAATA 98 24 100.0 39 ........................ CTTTTGACTATAAGGTGCCTGTTAAATATTAGCTTAACT 161 24 100.0 38 ........................ CATACTGTGGCATATGTTTCATTCGTTTTAAGAGTTTA 223 24 100.0 40 ........................ CTTGTATCGACAATTGATGCACTAAATGATAATGACTGTC 287 24 100.0 38 ........................ AAAGTAACGGTGACAATAAAAGTAGATGAAAATGATCT 349 24 100.0 38 ........................ GAAATAGAGCTAAAGGAAATCGAAGTTGAACCACTCGA 411 24 100.0 40 ........................ AATGGCAGCCATATATAATCAAAAATCGCTTCTACTAAAC 475 24 100.0 40 ........................ TTCGAAACTAACCTCATAATTACGGCATACGCGTATTTTT 539 24 100.0 38 ........................ TTCCTTTATCTGTGAGTTGCACAATTTCTTTATAGATC 601 24 100.0 40 ........................ GGCGTGTCGCCTCATCTTTATCAATTCGTAAAGCTCCATC 665 24 100.0 39 ........................ GTATGCTTATCGTATAAAGTAATTTGCCAAAGTTGTACG 728 24 100.0 35 ........................ TTCGATTTGGAATCCACGCCTAGCAATTCGCAGAC 787 24 100.0 39 ........................ AACTCCAGTACTGCTTCGCCGTAGGATCCGCCTCAGACG G [797] 851 24 100.0 39 ........................ TTTCTATTAAGAGAAAGTTACACTTTATCAAAAGACACT 914 24 100.0 37 ........................ AGAAACAGTGTATGGGATAAATTAGGTATAAGTGGCG 975 24 100.0 39 ........................ CCACCACCACAGTATATAATACATTTGATGGATTATTAA 1038 24 100.0 40 ........................ TACTTCATCACGTCCACGTTTGTTATTTTTGTTGATTTAA 1102 24 100.0 38 ........................ ATTCCAAAGTTACGTCATCGATGACCACGTAATGGAAA 1164 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ======================================== ================== 19 24 99.8 39 GATAATCTACTATAGAATTGAAAG # Left flank : GCATCTCCTTATTGCCGTTTCTGAATTTCTTTTG # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATGGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGAGCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 2158-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJM01000002.1 Sulfolobus islandicus M.16.13 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 2157 24 100.0 39 ........................ TGCTACTTCATCAATTAACAAACCACTGTGATCAAGCGG 2094 24 100.0 41 ........................ TCTCTTCTTTCTCTTCCTTATTCACTGGCGGATCACCTCAT 2029 24 100.0 38 ........................ ACGGGATTGAGTGTTACTATAGGTACCTCGAGTACATA 1967 24 100.0 38 ........................ AGTGCTGGAGGATTAGTAATACCGTAAGGATAATCTAG 1905 24 100.0 38 ........................ CCGCGGAATCCGCGGGTTCAAAGTCGTCTCAAGTTGGA 1843 24 100.0 38 ........................ TATTTTTCTAGCTTCTTCTTGAAGTCCTCAAACTCTAT 1781 24 100.0 37 ........................ TCGGCGGATCCTACCCGCCTAGGCAAAATGGACACTT 1720 24 100.0 41 ........................ GGGTCTTTCAGAATTTTTAGTATTTCCGAAAGTCTAGCCCC 1655 24 100.0 37 ........................ ATGAAATGTAATACGCTAAAAAGTACGTGTTATACTT 1594 24 100.0 37 ........................ ACCGAGGAAAGTGGCGAGGGACGGTCTGCGGACATAG 1533 24 100.0 42 ........................ TATATATGATCCTTTGTATTTATGTCCTCCCCACTCATATAG 1467 24 100.0 38 ........................ TACTTCCTCTATTCTTCGTGATCCTTATCTTTTATATT 1405 24 100.0 39 ........................ TACGTATCGCTTCACTATAGTTTGTAGTGTTATACAGTT 1342 24 100.0 40 ........................ TTCATCACTTTCCATTATGTTTCTTATAGGATATCATCTT 1278 24 100.0 40 ........................ GAATTGTATAACTTTGTGTAGATGTCGTTGGGCCACTTCC 1214 24 100.0 44 ........................ GGATGTTTGATCGCTTTTTGAATCCATTTGCCCTTCTTAGCCAT 1146 24 95.8 41 .........G.............. TCTTATTTTCATGCAACTATACATCTGCTTTATCATACTTA 1081 24 100.0 41 ........................ ATAACTGATGGCGTTGCTGAAGCTATCGGATGGGCATCTAT 1016 24 100.0 43 ........................ AATAATATATTTATATATCTTTTCTGCATCAACTATCATTCCT 949 24 100.0 41 ........................ TTGTAGTTGCATCTCCTTATTGCCGTTTCTGAATTTCTTTT 884 24 100.0 40 ........................ ATTATCCTCATATCATTAATTAATTTTCTATACTGGAATA 820 24 100.0 39 ........................ CTTTTGACTATAAGGTGCCTGTTAAATATTAGCTTAACT 757 24 100.0 38 ........................ CATACTGTGGCATATGTTTCATTCGTTTTAAGAGTTTA 695 24 100.0 40 ........................ CTTGTATCGACAATTGATGCACTAAATGATAATGACTGTC 631 24 100.0 38 ........................ AAAGTAACGGTGACAATAAAAGTAGATGAAAATGATCT 569 24 100.0 38 ........................ GAAATAGAGCTAAAGGAAATCGAAGTTGAACCACTCGA 507 24 100.0 40 ........................ AATGGCAGCCATATATAATCAAAAATCGCTTCTACTAAAC 443 24 100.0 40 ........................ TTCGAAACTAACCTCATAATTACGGCATACGCGTATTTTT 379 24 100.0 39 ........................ TTCCTTTATCTGTGAGTTGCACAATTTTCTTTATAGATC 316 24 100.0 40 ........................ GGCGTGTCGCCTCATCTTTATCAATTCGTAAAGCTCCCTC 252 24 100.0 39 ........................ GTATGCTTATCGTATAAAGTAATTTGCCAAAGTTGTACG 189 24 100.0 39 ........................ TTCGATTTTGGGAATCCCACCGCCCAGCAATTCGCAGAC G,A [168,172] 124 24 100.0 45 ........................ AAACTCCGGTACCGGCTTCGCCCGTAGGATCCGTCCCTCAGACGG 55 24 91.7 0 A.......C............... | A,C [37,48] ========== ====== ====== ====== ======================== ============================================= ================== 34 24 99.6 40 GATAATCTACTATAGAATTGAAAG # Left flank : TTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGTGCCATCTCTATATAAAGAGCAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTAGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGTCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGCTAATAAACCCTCA # Right flank : GTTTCNTTTTAAGANAAAAGTTNCCCNTTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 6756-9184 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJM01000002.1 Sulfolobus islandicus M.16.13 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================================================================= ================== 6756 24 100.0 40 ........................ TTTTGTTGGGGGGGAGGGGGTGGGGGTTGGGTAGTAAGTA 6820 24 100.0 39 ........................ TATTATACACATATAGTAATATTCAATCTTATTAATGTA 6883 24 100.0 40 ........................ TTATATATCTTATTAAACTGATACTCGTTGACTACTATCA 6947 24 100.0 38 ........................ TTCGCGTTTCATTACCGTTGCCATATTCCGTGAGAAAA 7009 24 100.0 39 ........................ TAATTATCCTTGAAAGTGTTGTTTTTCCAGTACCGGGCG 7072 24 100.0 38 ........................ TTCTAAATTCTTGAAATTCTGCAGACTAGTAAGGCCCT 7134 24 100.0 39 ........................ TCATCGAAAACGATTATTGATGGTTTTTGTGAAAACAGC 7197 24 100.0 36 ........................ ATGTTTGGTAAGTTTAGCAAGGCAAGTTTGGTTCAG 7257 24 100.0 38 ........................ TTATTTTCTTCTTCTGCACCCCCCTCTAAATTTTGTTG 7319 24 100.0 39 ........................ ATACTCTGTTCCTTGCTCCATCTTTAGTAATTTGCTAAT 7382 24 100.0 40 ........................ TCTAAGTTCAAGAATTGGCTTAAGGCTTTGGTGAGCCGGA 7446 24 100.0 39 ........................ TCTTTTACTAAGAAGCTTAAAAATATCGATCCATATATT 7509 24 100.0 103 ........................ TTCTATAATAAATTTTCTGTTGATGTAGGTTGTTGATTTAGGATTTTCACCACGCATACGCACCAGAAATATTTATTTCAGTTGATGTAGGTTGTTGATTTAG 7636 24 100.0 39 ........................ TTCTCTTGTTCTTTCGCGATCATATAAAAGTACTAAAGG 7699 24 100.0 38 ........................ GAACTGAACCATACTGTACCGTTTTCGGTGTTTTGTAT 7761 24 100.0 40 ........................ TATTTAATACAATACCCTTTTCACGCATTTGCCCACCACT 7825 24 100.0 38 ........................ TAATATCATACATGGACCTTCGCACGAGAAGTATTCAA 7887 24 100.0 41 ........................ GCAGGTTATGGCAATAATGGTATTGTTTCTATCACAGTAAA 7952 24 100.0 41 ........................ GTTATATGGCCTGAAGTGGGTGTTAAGTACGACGATGTAAC 8017 24 100.0 38 ........................ TTGTTTTGTACAACTTCATTTCCGCTCACGGAAACCTT 8079 24 100.0 40 ........................ AATGAAACTTTCATAATAACTGAGATCGACCCATTACCAG 8143 24 100.0 41 ........................ GCAATAATACCGCAACAAATTCCAGACCCACCTACTTATAC 8208 24 100.0 38 ........................ TTTATAGCTAGAGCAATAAGCAGCAATCGGATGGGTAG 8270 24 100.0 38 ........................ TAATGCCTATTCTCATGAAGTACTTCTTTCTGTGCTAC 8332 24 100.0 40 ........................ TTGTAACGGTATGTGCGTTTGATGGGATTGTAGTCGTAAT 8396 24 100.0 38 ........................ AATAACAAACTTAGGGAAAGCGTCGCAAAACTTAGAAA 8458 24 100.0 41 ........................ AGAGGAGTGTCGGGATCACAAGACAACATAAACAGGATGGT 8523 24 100.0 39 ........................ TGCCTTAAATTGTCCTTTTTGTTTGTGCAATGCAGTTAC 8586 24 100.0 42 ........................ TTAGTAATGATTCTCTATACTCACTTTTATCTAATTTACTTC 8652 24 100.0 39 ........................ GTTACAACAAACTATTAAGCGGCATTGCTCCTTCTGATG 8715 24 100.0 41 ........................ TCGCCAAAGTTTCCTAATGAGGAAGAACCCGGTAAGACCTA 8780 24 100.0 40 ........................ AAAATATCTTACTTGAGGTTTAGAAGAGAGAATGGTGAAG 8844 24 100.0 38 ........................ TGTCCGCTTGTGTGTGTCATTTGCAATTCCTCATAATA 8906 24 100.0 39 ........................ CCAACACTAGCACCAGCACCTCCATATGTCCATGCTATC 8969 24 100.0 40 ........................ CTGAAAATGGCATTGTTATAACCTTTACTTCGTAATGTAC 9033 24 100.0 39 ........................ TTTCCATCGTTTGTTTGCCCTGCAGCTAAAGTCACAACA 9096 24 100.0 41 ........................ AATATTAATTTAAGTATACTGCAATGTATCCATTCTGAAGA 9161 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================================================================================= ================== 38 24 100.0 41 GATAATCTACTATAGAATTGAAAG # Left flank : CTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAAGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGCTAATAAACCCTCA # Right flank : CTTCTCGTCTAAGCGTCCTGCATTCTCTACTAGCTNGTTGAGGATAATCTAATATAGAATTGAAAGACCGGCGAAGTACTTAGTATATCAAATATATNGAAGTAACTTGATCATCATACTATAGAATTGAAAGTTAATTACTATTGCTATCTTGCTATATGATGACTGTCGATCATCTACAATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 860134-863609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJM01000001.1 Sulfolobus islandicus M.16.13 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 860134 25 100.0 41 ......................... GTATTTTTCGATAACGTCTTTAAAAAGCATTTTCTTCGCCT 860200 25 100.0 39 ......................... AACATCTTTCTCTTCTCTTGTGCGCTTCTCATGTTCCAG 860264 25 100.0 38 ......................... AATAATTCAGCTTGTTTCTGATTGTTGATATACCTAGC 860327 25 100.0 36 ......................... AGATGGCGGATAAATGATGCCATTCAGTCATTTGTC 860388 24 96.0 35 ..........-.............. TAGTCCTTTTAGCGACCTCCCTCACACCTAAAACT G [860411] 860448 25 100.0 40 ......................... ACTTCAGAGTGAGAAACATGGGAATACCAGGTTTGCCATA 860513 25 100.0 39 ......................... AAAAACAGTGTGGACCCAGCAATAGTAGCAAAGATAACG 860577 25 100.0 38 ......................... GTTGTCTGGTCTCCAATATTAGGAGAATAAATTACAAT 860640 25 100.0 40 ......................... TTGGTATTTGCCATGATAAGGATTCTCAACTGGAGTTAAT 860705 25 100.0 38 ......................... CTAGTGGATCTGTTAGAACTAATAAAGCTGCCTTAATA 860768 25 100.0 39 ......................... AGATATTTTTGATGCAGTTTCCTCGCTTCCGGTAAGGAA 860832 25 100.0 43 ......................... TTTTTATTCTTTTGAATGTAATATCATTTAAAGTCGGGATACC A [860839] 860901 25 100.0 36 ......................... CAAACGGGCGAGGTTATCAGTCCTGCGCCAGTGCCT 860962 25 100.0 38 ......................... ACTGATTTGACAATAATAGCGATTGTTATAGGCTCATT 861025 25 100.0 40 ......................... AGATATAATTTTGCATTTTTCTTGTTCCACTCTTCTATTA 861090 25 100.0 39 ......................... GTCCTAAACATTCTTGTAAACATTCATTTCTATTTTTTC 861154 25 100.0 40 ......................... AACTTTTCAAATAGTTTGCAAGCATATAATCTATACTTAT 861219 25 100.0 41 ......................... AACAAACTTCGGACGAGGTATGGAAGCAGGGTGTTGCAACC 861285 25 100.0 38 ......................... ACAGTTGGGGATACCACAATATAATCCATAGGTTGTAC 861348 25 100.0 41 ......................... TTATCCTTTCGTAAGAACGATTCTAAAGTTTGTTATCGTAA 861414 25 100.0 48 ......................... TCAAAAATACGAGAAAACTTATGAAGCTGATATACCTTACGTTAGAAG 861487 25 100.0 39 ......................... TAGTATATCTATTTTCATATTTATACACCCGAAAAAAAG 861551 25 100.0 40 ......................... TAGTAATTCAAAACCATCCTTTTTTAATATTATCTCTATC 861616 25 100.0 38 ......................... AGAAAGTGGGATACAGAAGCCTCAAGACGATCCTTACT 861679 25 100.0 39 ......................... ATCATTCCTGCTATAATTAATAGACTCAACATTAAGAGC 861743 25 100.0 38 ......................... TTTACATAGAATAACTGTTTTACATCATTTTGTGACGC 861806 25 100.0 39 ......................... ATATCCAAATCTTTTACTTTCTATTACTTTATCTATCAA 861870 25 100.0 38 ......................... TTTCCATATTCTACGTTATCTGGATAGAGATAATATAT 861933 25 100.0 38 ......................... ATAGTATACTTTTGTCTCTACATTTATAATACGTCTCA 861996 25 100.0 38 ......................... CGTTTTCAGCGGGCTTTCTAGATTTGGTATTAAAACAG 862059 25 100.0 38 ......................... ACAGAAACATACCCGCCCCCACTAACTGCCTTTAATAA 862122 25 100.0 41 ......................... ACGATATATCTCTTCTATTACCTCATCGGGCATGAATACTT 862188 25 100.0 35 ......................... TTTCCTGCTTCTACCCACTGGTGTTTATGGTTTGA 862248 25 100.0 37 ......................... ACGTACAACTTTATGTTCCCCTTTCCGTTTCTTTCAA 862310 25 100.0 38 ......................... ATACATTATCTAAGATGATAAACGCCAGCTACTACTAC 862373 25 100.0 39 ......................... TTTCCATATTCTACGTTATCCGGGTACATATAGAATATT 862437 25 100.0 40 ......................... TTTTTCCACCTCAATATAAAACTCCCTACCCTGATTTGTT 862502 25 100.0 40 ......................... AGTACAGAAGAACTTCATACGGTGCCGTCAGTGACACCAT 862567 25 100.0 42 ......................... ATTTGAACATTATCTACATCTATCTTAACTTCATTTATATAT 862634 25 100.0 37 ......................... TATAATGTAATGTTAACAAACATTTCTATCACTATAG 862696 25 100.0 40 ......................... CTAACGTCCTCATCTAACATTCGTGAAGAGTTCTTTCTCT 862761 25 100.0 38 ......................... GGATAATCGCTTCCACCAGGTACATTATGACTCGTTAC 862824 25 100.0 41 ......................... AAACAGATATTTCTGTACATTACCCTTGTCATTCTCATATG 862890 25 100.0 40 ......................... TATTCATATTTTTGCTGTCGTAGTTGCTGTCATAGCAATT 862955 25 100.0 39 ......................... AATTTATTAAGGTTGAAGATTATCAAGACAAGACAATAA 863019 25 100.0 36 ......................... TTTAATACTAATGTTGCTTGTATATGTTTACTTAGT 863080 25 100.0 40 ......................... AGAATACTATATAATTCTGCGGGTATTACTGCATTATTCC 863145 25 100.0 36 ......................... ACTTAAAGATATAGATGAACTAGCACGGCAATATAA 863206 24 92.0 40 ..........-............G. TATGGTTTCTTCAGGATAGTTAAGTTTCAACATCTTCTCA 863270 25 100.0 37 ......................... AAGGATATATTGACATAGATGACGAAGATCTTTACTT 863332 25 100.0 37 ......................... GTTACGGTTAGTTTTTCCTTTTTCGCCAAAAAATCAA 863394 25 100.0 39 ......................... TTTACTTCTCTTTTAAGGTACTTTTTATGGCCTTATCCC 863458 25 100.0 37 ......................... GCATATTATTACTACTTGCGGTAACAGGGCTAAACAA 863520 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGATGATTACTAACCTAC 863585 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ================================================ ================== 55 25 99.6 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : TTAAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAGATGTTACCTAGAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAATTGTTAAATTAATTACAACTAGAATCGGTCGCATGAGGAGTAAAGGATAGTAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGATGACTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCCCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAATATGATTATCAAGAACTTGATAAACAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGAACTCAACAGAAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATGTCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 884720-882226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJM01000001.1 Sulfolobus islandicus M.16.13 contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 884719 24 100.0 41 ........................ AATATTAATTTAAGTATACTGCAATGTATCCATTCTGAAGA 884654 24 100.0 41 ........................ CTCTCGTCTCAGCGTCCTGCATTCTCTACTAGCTCGTTAAG 884589 24 100.0 42 ........................ ACCGGCGAAGTACTTAGTATATCAAATATATAGAAGTAACTT 884523 24 100.0 41 ........................ TTAATTACTATTGCTATCTTGCTATATAATGCTTTTTTCGC 884458 24 100.0 41 ........................ TGTCCTCTTCTATGGGCATGGACTTAGGATTAGGGTTTTTA 884393 24 100.0 39 ........................ TAATCCACATAAGCCCTCTTTCACTCCCGTACTTTGTCG 884330 24 100.0 36 ........................ TTACCTTTACGGATATGAAATTGATGATATCGCTGA 884270 24 100.0 38 ........................ TCTTTCTCTGAGGGATACATCGGCGATATCTTCAATAA 884208 24 100.0 42 ........................ GAGGGAGTATAGTTGAATCGAAGTATGACGTACCAATCCCAT 884142 24 100.0 38 ........................ CCAAAAAAGTAAAAGTTAGAACATTAAAATATGAAGCA 884080 24 100.0 38 ........................ TATCCCGTACGTCTGTACTCAAATTTTATTACCTTTCT 884018 24 100.0 39 ........................ TGCCTTCCGCTTCTACTTGTGTGTAATCTTGATTTGATA 883955 24 100.0 40 ........................ TAATTTAACTAATAACGCGGGGGTTTAAAAATTTAACGGT 883891 24 100.0 39 ........................ TACTAGAATTAGTTCCTCATTACTCTTAGAAGACTTCTC 883828 24 100.0 40 ........................ TCTTGTATGATAATCCATTCCTCAGTTCTATCTTTAGTAT 883764 24 100.0 39 ........................ TCATGAAATTTATTATTAACAACAAGATATAATTATTTA 883701 24 100.0 39 ........................ AAGAGGTGGTATGTCACATGGGATTAGCTATGTATAAAT 883638 24 100.0 37 ........................ AAAAAGGAATGGAAAGAGCAGGAAATGAAACTATATG 883577 24 100.0 40 ........................ CCACCACCGCCGCCACTACTACCACCACTGCCAGCACTGC 883513 24 100.0 41 ........................ TATACGTCAGCTATAACTATAGCATATGGTTATGCACCAGG 883448 24 91.7 37 AC...................... ATTAGATAATTATAAACTTCTTTTTGTTTATATTGAA 883387 24 100.0 39 ........................ ACTAAGTATCAGCAATGCTCAGCTGAGAATTTATTACCA 883324 24 100.0 39 ........................ AACAAAACGCTAGATTGTAGAGTTATATTAGTAATAGCG 883261 24 100.0 40 ........................ TATCTTCTAATACCTTATTCTTCTCTTCCAGTTGCTGTAT 883197 24 100.0 40 ........................ TCTAAATTTTGTTCTATGTCGGAAGAAGTATAAATGCTAT 883133 24 100.0 39 ........................ GAAAAAGTAATAGAGGGCATCTTTGAATTAGGCTTATTT 883070 24 100.0 40 ........................ TTAGTTTGAACAAGTTGGACATAACGTCCGTAGAACCCTA 883006 24 100.0 39 ........................ TAGGTTTTTCGATTTTAAGAGGCTCTTCTACTTGCTCTA 882943 24 100.0 40 ........................ TCAACATCGACATAATATACTATAACTTCCGCATTATCAA 882879 24 100.0 38 ........................ AATTTACTATTCTCTACTAAAGTGTCTTGTACTACTAA 882817 24 100.0 37 ........................ ATATTGGTAGACAAACAAAGTATTACTGAAAATTCAT 882756 24 100.0 37 ........................ TCGTAACCCTGATTTGGTACCAACCCTTTTCCCTCAG 882695 24 100.0 40 ........................ TCCATGAACTGCCTGAGCTGACGAATTGCTACTATCAAAG 882631 24 100.0 39 ........................ ATATATGCTGTAATCTATAGACTAGGATATACTTTTGTT 882568 24 100.0 39 ........................ AAATGAGCGTACGCCCACACCGGAAGTCTTCCGCTTAGT 882505 24 100.0 40 ........................ ATCTAACTATGATAAACTGGATGTAGAAATATTATTTAGA 882441 24 100.0 40 ........................ GTATCAGTAGAGCATATATTAGCTAACATTTCCACATTAT 882377 24 100.0 40 ........................ CAACTAAATAAATAGAAATTTCACTAACCAACACATAACT 882313 24 100.0 40 ........................ AGATAAAAAAGCTGAGGTACGTATGCCCACACCCTGGCTT 882249 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 40 24 99.8 39 GATAATCTACTATAGAATTGAAAG # Left flank : CCTCCATATGTCCGAAAATGGCATTGTTATAACCTCTACTTCGCAATGTACGATAATCTACTATAGAATAGAAAGTTTCCATCGGTTGNTTGCCCTGCAGCTAAAGTCACAAC # Right flank : TATACTAACTATTAATCATTGCTTAGTGCCGAAAGTATACTATAATGATGATTTTTGTAGCTTAGTGCTTACACTATCGAATTTCTTAGGTCTTAGGCTAGAAGAAGCAAAATAAAACTAAATTTTAGTTAAGTTAAAAGTTAGCTATATGTTTTGAGAAAAACTGAAGAATTCCAGCATGAGGGTGGGAAAAATTCTTATTTTTTATATTCCCACTTACATCTATGGATGTTAAAATTGCTGACTCAAAAGGGAGGGTTTATTTAGGTAAATGGTATGCTAATAAGAAAATTTATGTTGTGGATTTGGGCGGAGTTATGGTTTTAACTCCTAATACTGTTTTTGCTGAGGGATTAGAAAAGATGAGGAATGTAAAGGACTTAATGGAATTCCTTAAGTCGATATCGCCTAAGGAGTTAAAAGAGGCCTGTAGGGAAGCCGTATGGGAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //