Array 1 343696-344578 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGKX01000002.1 Escherichia coli strain sc12-98 NODE_2_length_465051_cov_597.951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 343696 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 343757 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 343818 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 343879 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 343940 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 344001 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 344062 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 344123 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 344184 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 344245 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 344306 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 344367 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 344428 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 344489 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 344550 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 370281-371468 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGKX01000002.1 Escherichia coli strain sc12-98 NODE_2_length_465051_cov_597.951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370281 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 370342 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 370403 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 370464 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 370525 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 370586 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 370647 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 370708 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 370769 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 370830 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 370891 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 370952 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 371013 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 371074 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 371135 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 371196 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 371257 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 371318 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 371379 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 371440 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //