Array 1 161295-160593 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOA01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N51291 N51291_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161294 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 161232 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 161171 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 161110 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 161049 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 160988 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 160927 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 160866 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 160805 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 160744 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 160683 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 160622 29 96.6 0 ............T................ | A [160595] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178985-177554 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOA01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N51291 N51291_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178984 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 178923 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 178862 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 178801 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 178740 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 178679 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 178618 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 178557 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 178496 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 178435 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 178374 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 178313 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 178252 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 178191 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 178130 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 178069 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 178008 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 177947 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 177886 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 177825 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 177764 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 177703 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 177642 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 177581 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //