Array 1 62017-61124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOUV01000035.1 Campylobacter coli strain CVM N4677 N4677_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 62016 36 97.2 30 A................................... TCCATTCTCATGAAATATTTAGCCATTATT 61950 36 97.2 30 A................................... GCACCTGTTTTTGATTGAACGAAGCAACCA 61884 36 100.0 30 .................................... AAACTTTTTACAGCTTTGTAGAATATATAA 61818 36 100.0 30 .................................... TTATTTTCAAGTGAAAAGGAATAAAATGTT 61752 36 100.0 30 .................................... AGAAACTATATTAGCAGGCATAAATAATCT 61686 36 100.0 30 .................................... TTATGAATGTAATTTAAGTACAAGCTTTAG 61620 36 100.0 30 .................................... CTCATAGGAAGTTTTAATCTTGGTAACTCA 61554 36 100.0 30 .................................... AAATTTGATGATAGCTTAGAAGTTGATTTG 61488 36 100.0 30 .................................... GAACCAATATCAGCCCCAAATAAATAACCA 61422 36 100.0 30 .................................... GAACCAATATCAGCCCCAAATAAATAACCA 61356 36 100.0 29 .................................... ATATCTTCTTCTAAATGCTCCATTCTATA 61291 36 100.0 30 .................................... AAATAGGCAGGTTTAATGATAGTATTAAGC 61225 36 100.0 30 .................................... TAGAAAAATTGGAGGTGGTGCAAATGGAAA 61159 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGCGCCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGGTTT # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGTGTTAAATTGGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //