Array 1 286178-289752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013011.1 Pyrodictium delaneyi strain Su06 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 286178 25 100.0 49 ......................... TCTCTGCTACATGAAGCTCTACAAGGTAGTCAAGGTGCTCGACGACGCC 286252 25 100.0 43 ......................... GCGTCGGATGGTATGTCGAGGACGGCAGGGCCTATGGCCACGC 286320 25 100.0 42 ......................... GTGCTACTCCGGGCCACCCGCAGCTCCTAGGGAAGAGCGTGA 286387 25 100.0 44 ......................... CATACCGGGCAAGTGGAAGGGCTACCTTCGCCCTCATGGCCGCT 286456 25 100.0 42 ......................... TGTATGACTCTTCGCCCAGTCGAGCGCCCCCACCTCCTCGAG 286523 25 100.0 43 ......................... AGACCATGCCTGGACTGGGACGGCCGGCCTGCCAAGCCGGCGA 286591 25 100.0 40 ......................... ACCAGGGCCGCGGGTTTGTCAGCGGTATGGATACCCACGA 286656 25 100.0 44 ......................... TTCTCGAAGTGCCACTCTATCAGCGCATCCCTTACACGCTGTAT 286725 25 100.0 44 ......................... AAAGTATAGAAGCGTACCCCCGCTGCGCCCCCGCCTGGGCATAG 286794 25 100.0 45 ......................... ATAGCCACGGCGGGCTCGGGCTCGACGTACCATCTCACCCTTATA 286864 25 100.0 40 ......................... CAAAGAAGCTAGCGGAGATAGAGGAGCTTCTGGAGCGCTT 286929 25 100.0 42 ......................... TCCCGGTACTCCACACGTACTATGTAGCGCATTAGTCCTCCA 286996 25 100.0 38 ......................... CATGTGCGTGCGCCTTGGACCGGGCCCTCGGCGGGCCC 287059 25 100.0 42 ......................... CACTTGTAGCCGAGCAACAAGGATCACTAGATTTATATACGT 287126 25 100.0 43 ......................... CTACTGCGGAGGAAGGAGAATCAAAGAGATACTCGAGGAATAC 287194 25 100.0 41 ......................... CTCACGGCGAAGCGGCCACTCAAAACGCCGAAGATACCTAA 287260 25 100.0 39 ......................... TGGCATCCACGGCAAGCCACCGCCCGGTGATGGGAAGGA 287324 25 100.0 41 ......................... ATAGTTACTGTGACGGGTATACTTACTGTATCTATCTGCTC 287390 25 100.0 40 ......................... TAGCGAGTAGGATGAGGATAAGAGAGTTCAAGATCATGCT 287455 25 100.0 43 ......................... CGGTAGCATTGCCCGTGTCCTCCTCCCACTCCTCTATATACTC 287523 25 100.0 43 ......................... CTTCAATACATTACACTCAGCCTTGTCTCCAGTGTGTTTTAGA 287591 25 100.0 38 ......................... GGCGTCGAGCCCTCACGAATGCAACAACTCTCTCGCGG 287654 25 100.0 39 ......................... GTTTTCCGGGCTGATGTATGGCTAGTTTTATCCTGCCTA 287718 25 100.0 38 ......................... AGACTATATCGTACGCGTTGTGGCCGTCCTGTTCCCGC 287781 25 100.0 43 ......................... CTCATACTCGCTCCTTATCTCCACGCTCATGTCTCTCCCCCGA 287849 25 100.0 44 ......................... TTGAAGGAGTTAATGGCTGATATATGGGCGTTCTTCGGTAAGTT 287918 25 100.0 44 ......................... GCAGGTGCTGGGATATCGTGGTGAACGGGCCCGAGTGCGTCTAG 287987 25 100.0 42 ......................... AGCTGTTGATAGAGCTGCGGATATATTAAACAGTTTGAATAT 288054 25 100.0 42 ......................... TCATTAGCTCGCCGCGGCACTTATGCCAGCATACGTGGCCCA 288121 25 100.0 39 ......................... TACTCCCCAGGGAGGTTCTCGACGCGGAGCTCAAGGTCT 288185 25 100.0 39 ......................... AGTCAGTCTTAATCATACCAAATGAGGGCACTGTCAGCC 288249 25 100.0 43 ......................... GTCGTTTGGCATGATTAAGACTGACTGGGTGGAGGTGAGGCTG 288317 25 100.0 45 ......................... GGAAGGGGCCGGCTATCTGCTTGGTCTCCTTCACTACGTCGTCGC 288387 25 100.0 42 ......................... ACTCCTCGTGACCATGAACGCGAAGACATCGGCCATGAGGGC 288454 25 100.0 43 ......................... CGCTTATCCAGCGCCGGCAGCATGACCTCGGCCCTTCCGTAGG 288522 25 100.0 42 ......................... CGAGGTATGCGAGGATGCGGATCTTGGTCGGGAGTAGGCGTT 288589 25 100.0 42 ......................... GGATCTGCATCGCGAGGGCAGTATAAGGCTTCTAGGAGTAGT 288656 25 100.0 39 ......................... TGAAGCTTATGGTGCCGCTAGTGTCTATCGTGAACTCCT 288720 25 100.0 42 ......................... AAGGCCAGTGCGGCGTGGCGCGGTGTGAGGCTGGGCAGCGGC 288787 25 100.0 44 ......................... AAGGAGTGTCCCCGAAAGTGGAGCAAGTGCCTAAAGTCCTAGCC 288856 25 100.0 43 ......................... TGGCATCTCCAAGGCTGGACTTATCGCGCAGTCTTCAAGCCTG 288924 25 100.0 41 ......................... ATTCTAAATTTTTATGTGGGTTATGCTGGCCCAGCGCCAGC 288990 25 100.0 37 ......................... ACGCACCGCCTTATCGTGAACTCTAGATCCTCCACAT 289052 25 100.0 43 ......................... TGTCGCGGCTGTTGCGGCAGCGATAGTCTTTGTAGCGTACCAG 289120 25 100.0 36 ......................... CTATGTGGTTGACTGCTATCCTGATGAAGTGTAGTA 289181 25 100.0 41 ......................... TAGAGGGGTGACAGCGTCCGTGACTGAGTATGTCTGTATAG 289247 25 100.0 44 ......................... ATTTTAGTTTATGCGTTCAGTGGCAAGAGGGAGTAAGCTAATAA 289316 25 100.0 44 ......................... CTCTTCGGCAGTATTCTGCGCTCGAGCAGCCCCGCCTCTGCCAG 289385 25 100.0 44 ......................... GATGGGACATGGTACACGCTGGCAAGCGAGGAAGTGCAGGTAGT 289454 25 100.0 45 ......................... TTGCTGAGGGTTATCGGAATCTGCGTCGTGCCGCTGATGCTCGTG 289524 25 100.0 46 ......................... ACCGCCAGGATGGCCACGTCCACGACCAGGCTGCTGGCCGCTCCCG 289595 25 100.0 40 ......................... GTACCGCTCTTGCTGCCCTGTATGGTGTAGCCCAGTGGCG 289660 25 100.0 43 ......................... CTTAGCAACATCATCACCACAACCTACATCTATGTGGTGGAGA 289728 25 80.0 0 A..C...........CG.C...... | ========== ====== ====== ====== ========================= ================================================= ================== 54 25 99.6 42 GCATAACTCAAAAGAGAATTGTAAG # Left flank : CCACGCAGCCTGCCCCAGAGCCCTCGCCGAAGCACTACACCAGCTACTAGAAGCAGGACTCTACACCGGCGCCGGAGCAAGCCCAGGCCTAGGCCTAGGCGAAATACACCAAGTCAAGATAGAGAAGCCCCGCCACCGGATACCACCTCCGCTCGAGCCATGGATCGAAGAAAAGGAAAGCAACTAGCCAGAGCAGGCAATGACGACACAACATTAACGCTATTCTCTCCCAGCTTTTGTCTGCTGTGTCGATTCTCTGTTCTGGGGTGTTTTGGATCTGGTTTCAACTCTATGGGGACACGTAATTAGTGGATTTGAAAGTGTTCTTGGGAACACGCCTACACCCTTATAAGTCTTCATGGGAACACACTTCACGGAGACACAGTGCCCGACGGTAACGGAATTGAGACTGTTCCCAAGAAGAAGAAAACAAATAAATACAGGAACCATAGAATCCTACACCACCAGAACCCAACAAGAAACCATACATTCCACACAAA # Right flank : GTATACCGATTAGGATCTATAGCCTTAGTCTAGTATGGTGTTGTGTCATTGCAACATAGATGTGATGGAGTTCTCTAGCTAGCTGCGGTCGTCTTGATAGTAGCTGTAGCGTCTTTTCGGGGTTCTCTAGTATTTCTAGCAACTGGTAAGCGTTGTGTATAGTCCTTGCGAGTACTCCCTGTCTACCCCACTCTGCTAGCGCTTCGGGGCTAGCTCTGCATGCTGGGCAGTTGCAGCGAGCTGCTATCTCTTGGGGGGTTGCGCGTGGTCTTCCCGGGGTCTGGCGGGGCGCTGTGAGGGCCATTGCAAGTGTCTCGGGGTGCCGGGTTAGCCCGTAGCGGGCGTCTTGTAGGGGGCTGCTAGTGTCTGCAGTGTCTGCCAGCCTTGTGTGGGCTAGTGCTGCGAGGAGGCTGTTACCGGCCCCAAATACGTGGATGCGCTTATCGATGTGTACTCGTGCATAGTGGATGAGCCTCAGAGCTTTGGCTGGCTGGTAGCGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATAACTCAAAAGAGAATTGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 311363-307846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013011.1 Pyrodictium delaneyi strain Su06 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 311362 25 100.0 45 ......................... AGGACCCTAGAAGCAGAAGTAGACCAGGTGACTCTACCGAGAGAA 311292 25 100.0 46 ......................... TCGTCTCGCCAGAGCGTATGCAAGGTTTATGGAGGTGGTGGTTTTG 311221 25 100.0 44 ......................... GGAGTGCAAGGTCCCCCGGGCCGAGTGCTCATGGCTGCATTCCT 311152 25 100.0 46 ......................... CAGCAACACGGTAGCGGATGAGGCGATAGAGCTCGACAGCATAAAG 311081 25 100.0 38 ......................... CTGGCTAAGTGCTTCTTCTGCAAGCATCTAATCGGTGT 311018 25 100.0 39 ......................... TAAACACGCTCAGACGGCGCAGCGGGAGTGGGAGCCATG 310954 25 100.0 44 ......................... ATCTTCATCCGAGAGATAGCAGACCAGCGGGCTAGCATCCACCG 310885 25 100.0 40 ......................... TCTCCTCGCCAGCAGTAGCGCTCTCAATGAGTGACTCTGC 310820 25 100.0 39 ......................... GGGAGTAGCCGGGCCGGGGAACCCCCTGGGTGAAGGCCC 310756 25 100.0 43 ......................... TCGGGGCAGCGCTCGGGATGAAGGCCAGCAGGTTGGGGTTCTT 310688 25 100.0 42 ......................... GTGGCACCGTACGTGTATGGTTCGATGAGACACATGATACCG 310621 25 100.0 44 ......................... ATAGCATTACCGCGTCCGCCGCTATTCCGGCGGAGACCGATGCG 310552 25 100.0 44 ......................... TGTGTTACCGGTCGATGTGCTAGTGCCACCGGGGACATACACCT 310483 25 100.0 43 ......................... TTTAAAGTGAGGTGAGAATGGTTTGGTTAGCTGCCCCGACTAT 310415 25 100.0 46 ......................... AGATTCTGCACAAGTCATGAGTGCTGAATCTATCCGAATTCAGCAT 310344 25 100.0 39 ......................... CCAACCGCTCAGCAGCCTTAGCCCAGACATCCCGGAGCC 310280 25 100.0 46 ......................... TTTTTCCTATCCTATTTCTGCCGGAGTTAATCCTCCAAAGGGATAT 310209 25 100.0 40 ......................... TTGAGGAGCTGCTGGTATGGATGCTGCAAAGGGGCCACAA 310144 25 100.0 45 ......................... ATAACGGATGCCGGGACTATCCATGCAACTGTAAGCATTTCGGTT 310074 25 100.0 44 ......................... CGATTCCTAACAACTCGCTGACAAGCTTGGCAGTACTCTCATGT 310005 25 100.0 44 ......................... TCGGCTACTTCATCGCCCGCTGGGGCATACGAGCCTACCGCGAG 309936 25 100.0 47 ......................... TTCCCGCCCAGCCTGGCGCCGATGGCCGGCGTGGGCTTCATGGGCGG 309864 25 100.0 45 ......................... TCTGCGCCCGCCTGACTGCCTGCATGACCTGGGCCTGCTCGGCTG 309794 25 100.0 46 ......................... CTAGCAGCGTGCCGCCGGCCAGCGCGAAGCCCATGGCGCGCGCGAG 309723 25 100.0 45 ......................... CGGATAATAGCCAGGAAGGCCATGGACGGCGGCATCACGATAGCG 309653 25 100.0 42 ......................... GCACCCTGCTAGAAATAAATGCCAGAGGAGGCAATGTGTGGT 309586 25 100.0 47 ......................... ATGACTCCATTGCAATCCACGTACTTCCAGCACACTGTCTTGTTTCT 309514 25 100.0 40 ......................... GTTACTTCGCTATTGCAAACTTGTGCGTCTCTAAGAAATG 309449 25 100.0 46 ......................... ACTGACACACCCCGTAGCGCCTACCGAGGTAGTAGACCATCTTCTT 309378 25 100.0 41 ......................... TCTCGTTGTAGCGGGGGCTTAGCCGTGTCGATGATGTATAT 309312 25 100.0 42 ......................... TTGAAGCTCGCGGCGCCACTACACGACGCCAAGATCTATGCT 309245 25 100.0 43 ......................... GTGGCGGCGCAGAAGCGGGCTATGTCTGATACAGCCTTCTCTA 309177 25 100.0 45 ......................... CTAAAGAACAAGCCAGCAACAAGCTAGCAGCCACGGCCTGCACCA 309107 25 100.0 45 ......................... GCATGGTCCTAGAGCCCGGCCACAACATACACCTAAAGATAACAA 309037 25 100.0 43 ......................... TCTTTCTCTCTTCTAATGCTTCTTTAAGCCAAGTAAAATACTG 308969 25 100.0 43 ......................... CCTAGCAGCCTTCGCAGCATAGGGAGCCACGTTCCTTATGCGG 308901 25 100.0 42 ......................... TGTGTTCTTCTGCACAGTCCTTGTCGCACGCCTCTATGCAGT 308834 25 100.0 45 ......................... TGTGTCGAGATAGTGTGCTCCCGTGACGCTGAGCTCCCTGCTCAC 308764 25 100.0 45 ......................... TGAATTTCTCTCCGGTCTCCGTGTCTATGAAGTGGATATACTTCG 308694 25 100.0 42 ......................... GTCATGGGGTCTACGTTGTACTGGTACTTGTCTTTGGTCTGT 308627 25 100.0 38 ......................... CGCTAACATACCTCGCTGCCTCGGGGCGGCTGGCGGAG 308564 25 100.0 48 ......................... ATGTAGACTATGAAAGCCACTGCGCTGAGGGTGCCAGTCTGCTCGTTG 308491 25 100.0 47 ......................... CTCTATAGAGTTTCTGGATTTCTCGCTGCAAACAATGCCCCCGGGGT 308419 25 100.0 45 ......................... GTCGATGTTGACGTGCCGCCGGGTATCTCTATCTCATCGACGTAT 308349 25 100.0 47 ......................... TAACAGAGCGGGCACAGAGTCTAGACCTAACAGCCGTAGCCAAGTAT 308277 25 100.0 39 ......................... CCGAAGAAATGTGTGGGCTAGACGCTAGAACAGGGGCAC 308213 25 100.0 43 ......................... CTCAGCACAGGCAGGGCGCCCGGCCACGGTTTCAGGCCCGGGA 308145 25 100.0 42 ......................... ACGCGCCGCGCTAATAGCCGGCAGGATATTCGCAAAGTACCG 308078 25 100.0 45 ......................... GTGTCACGTAGCATGCGCTCAGCGTGCCGTACGCACCATCGGCAT 308008 25 100.0 46 ......................... CGTGGTTCTCGTGCCGCGAGGTGGAGTTCACCAACATACGCGTCAA 307937 25 96.0 41 ........................T GCAATGCTGCCGTGCCAGATGTAGTCTCAACAACGACGAAA 307871 25 80.0 0 ..T.G......CG.......A.... | C [307850] ========== ====== ====== ====== ========================= ================================================ ================== 52 25 99.5 43 GCATAACTCAAAAGAGAATTGTAAG # Left flank : CCTATTCGGAGTTCACCCTCACTAAGTCTTATAGATGTTGCAACCACGATATATCACCACCTCTAGGCTACAGGCAGTAAGAGCGTGAACAGAGTGCACTAAAATACTACGTGGCGATGAAACAGAACCAGATGTTGATAGGAAATAACTTCACTTATGGTCTCACACTATGCCACATAGCAATTCATGTAGCCCGAGGCAGTACTAGTATAGCTAACGCTGCGTTACTCTTTCTTGGTTTTGTCTGCTGTGTTGATTCTCTGTTCTGAAGTGTTTCGACTCCTCTTTCTAATCTATGGGAACACTTCTTGGCTGGATTTGAAAGCTGCCGTGGGGGCACGCCAGGCCCCTAATAAGCATTCATGGGAACACATCCCACGTACACGAAGTATACGATGGTAGGGATCGGGGCTGTTCCCAAGGAGGAGAAACAAATAAATACAGGAACTATAGAATCCTACACCACTAGACCCAACAGGGAACCATACATTCCACACAAA # Right flank : ATTACAAGCTTAGGGAGTCTAGACTTGTGATTAATAATGTAAACAGAGATATTATTATGTCTGGAATTAAACGTCTATAAGTGGCCGGCAGGGATACAGAAGGCCAGACCGGCCTAGCAGTTTCTGCTTTCATGTCGTACTCGTGGAGCTTGTTGAACTCCTCACGGCGCTCTTTAATGGCTCTTTTTATGATTCTTATATGATAATGTTTGTGTCTAATGCTTTTACTCATAGAGCATGCCTATGCTAGGTTGAGGGTGTTTCTACATTAGGCTCGGTTATGGATGCTTTGTATTTAGGTTTAGGGCTGGAATGTCTATATGTGTTTCTTTGCTGTCTCTTTTGGCTACCAGCTTGACTCTGAACTCTTTATTGGGTAGGAGCTTCTCTAGGGTCTTTAGCGCAACTAGTGTCTGTAGTACTGCGTAGACGGGTTCACCTGGTTCCTCGCTGGCTAGGCTACTTGTGGCTACAAGTACTGGCTTTGCTATCTTTGATGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATAACTCAAAAGAGAATTGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1335798-1335287 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013011.1 Pyrodictium delaneyi strain Su06 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 1335797 25 100.0 43 ......................... GCTTTAGCCTCTTCCTTGGGCTGCTCCCTCTTAGCCGCCGGTG 1335729 25 100.0 52 ......................... TCAACGTTTTCGTTAATACGTTGGATAGCCACCAATCACTAGCTGCCTTCAA 1335652 25 100.0 41 ......................... ATGACTCTGTAGTCCTGACAAATGGTGTACTTACATATTCT 1335586 25 100.0 45 ......................... GTGAATGAGGGGCTCCTCGGGCGTGAGGAGCGCCAACTCCCGAAG 1335516 25 100.0 43 ......................... ACTATGGCTTCTAGGAGTGCCTTAGCTTCCTCAACATCACCAT 1335448 25 100.0 44 ......................... ACACGTATCATTTGTGCCTCCTCGTACCCGACTTCAGTTACTAG 1335379 25 100.0 43 ......................... TCCTGCTAGCCGACGTAGCGGTCGAGGCCGCTGTTCACGCTCT 1335311 25 88.0 0 .......GG..............T. | ========== ====== ====== ====== ========================= ==================================================== ================== 8 25 98.5 45 GAATCATAACAAATAGAACTGAAAG # Left flank : CAAGCCTCAACCTCTCAGAGCGGACAATCCGAAGACACACCCGGACACTCCAACGACTACAACTCCTAACCCAGCGAGCAAACCTAATCCTACCAACACCATGGCTAACACTCTACCACAAAACAAACACCTAACACAACAAACACAAGGTTAAAACAAGCTACCAAGCCAGACCAATAGTATAGAAACCACACACTCCCAGAGAAACATGATCCATGACAGCTCCTCGTCATAGCCGGCCCAGAGCCTCTTATTTTTGGCGGTCATAGCCCCAGGCACCGAGGACAACACATAAATATCCTCTCCACCATGGAACTTGTTAGAAAAACGCTAAACACGTAGAAACAATGCCATCGATGGAACCATCAGCGATGACCACACTATCCACCGGCATGGATAGGATGCAGACACCTCTAACACGCAAAGGAAGAAGCACTATAAACCCAGACAAAGAAATAAATACATGCACCACAACAACTACACTAGACAGAGAAAATGCA # Right flank : GAGTGTAATTTGTGGCCGTTGTGTGCGGTGGAGGGTGGTTCTAGGTGTCTTTTTGTGTTCTTAGAGTTGTTCTTAGAGTCTTGTTAGGTGTGCTGTGCTGGGGTTTTGGATTGTTTTGTCGCAGGGCTTGGTTGCTCTGCGTATCCGGTCGTACTCGTGTATGGGTATTATCGAGGCTGTGATGGTTGCGCCTTTTCTTAGGGCTTCGAGGGCTGCTGCTATGCTCATGAGTTTCCGGCCGCCTGTGACGTCTAGTATCGTGTCTGGGCCGAGGAGCCTGGATAGTGTTTTTCTCAGCTGGGTGATGTCCTGGGGGCCTGTTATGTCGGTGGAGGGGAGTAGTAGGAGGCGTGTAGCTGGTGGTGCTGGTGGTGCTTCTTCTCCGGGGCAGGGGCAGCTCCTGGCGATCTCTATCGCCTCGGTGCCCCATTCGTGGCGTGTGGCAACCACTACTACCTCGTCCACCTGTATGCCTTTCCGGCGTAGGAGGCAGAGGGTGG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 1340092-1340665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013011.1 Pyrodictium delaneyi strain Su06 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 1340092 25 100.0 47 ......................... ACCGCTCCCCGCCCCCTACGCAGATTTCTCGATTAGCTCGCCCACGC 1340164 25 100.0 41 ......................... ACTTCACCGCTGTCTCTCACTTCAACCTCTGACAGTAGATG 1340230 25 100.0 45 ......................... CTCCACGTAGAGCTTCTTTACTAAGAACGACTTCCCGGCCCGTCT 1340300 25 100.0 44 ......................... ACCTTAACGACGCGAAAACCATGCCTGAACACCTTATCGGATAC 1340369 25 100.0 44 ......................... TATCTCCCTTCCTTGATGTACTCTAACATTTTTTCGCTAATGGT 1340438 25 100.0 44 ......................... CTGTCAAACTTCAGTGCCTCTGGTCTAGCAAAAAACGCTAGCCT 1340507 25 100.0 43 ......................... TACTCGCCGTCCAAGTCCTTGATGAACGCCACTGAGTCCAGGT 1340575 25 100.0 41 ......................... ATTAGGTAGCCCGGAGCCGGGAGAAACCAATGGCTGCTGTA 1340641 25 96.0 0 .....................G... | ========== ====== ====== ====== ========================= =============================================== ================== 9 25 99.6 44 GAATCATAACAAATAGAACTGAAAG # Left flank : TACACCCTACAATGGGCCAGAAACCTCATACAGAGAACCAGGAGGACAATAGAAAGCCCAATCCCACCCCTAGTAACACAGCCCAGAGAGAAATGCCGCTACTGCACACACCGCCACACCTGCCCATACCCAAACCTAGACTAAACCAGTAAACCACCAGGCTAAAACAAGCCAAGATACACAACCAGCGCTACACTATACACACACTCCCAGAGAAACACAGCCCATGACAGCTCCCCGCCATAGCCGGCCCGGAGCCTCTTATTTTTTGCGACCATAGCCTCAGGCACCGAGGACAAAACATAAATACAACCACAATCATCAAATAGTTTAGAAAAGCATTATGCATGCAGAAACAATACTATCGATGAGACCATCAGTAATGATCACACTATCCCCCGGCATAGCTACAATGTAGACACCCGAGACACCAGCTAGAAGACTCTCAAGAAAACAATAAATACAGCTATAACAGAGGCACATAGAGTGGACAACATGCA # Right flank : GGCGTTAACAATTCTGGGCTCATTCTGTGTGGGTGCAGATTATGCCCCATATCGACCAGTATACGTAGGCTATGTATGCTAGGAGGAGTATGGTTGCTAGTAGGAGTGTCCACTTTACTGTCTTTACAATGTATCTGGCCCGAGAAGGTAGGCGTTTTCTCGAGGTGTTGATTTTTCCGGAAAGTCGTATGAATAGGCTCTCTACTGCGGAGTCGCAGAGCATCCATACTGCGTAGAGCGTAGGGGAGGAGAGTGCTGTGATGGCGAAATAGGTGAAGGCGAGTACTGACTTGTCGGTACCCTCTTTGGCTAACCCGGAGACGAGGAGAGCAGCGGCTAGGCTCGGTAATATGATTGTGAAGGATATTGTTGCTGTGGTGTCGAGTATCTTTGCCTCTATGCCTCTAGTCTCGCGGCGTCTCAGCCTAGAGTCTGCACTGAGGAACAGTATGGTGAACCATGGCCCTACTAGAGCCCAGAGGAGGGCAATCTCTTTCTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 5 1358985-1359902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013011.1 Pyrodictium delaneyi strain Su06 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 1358985 25 100.0 48 ......................... CCAAATCCGTGAGTCTTATCTCAACCTTCATCTTAGCCATGGCATCAC 1359058 25 100.0 44 ......................... TCTCGTATGTAGTCATCATTTTCCTTCATTGGTATCGGATCAGA 1359127 25 100.0 43 ......................... TACTATCACCCGCTCGGGTTAGCCCCGTGTATCAATATATATG 1359195 25 100.0 44 ......................... TCTACGTAGCCCATCTCGACGGCAGAGGCTAGAGCCCTCGCTAT 1359264 25 100.0 48 ......................... AGTCATACGACGACTACGCACGCTTCCGAGACGCCGTTGACGCTGCAA 1359337 25 100.0 40 ......................... CACCGGGTCCTAGCTCCAGGCATCGCTGGTAGTTGAGCCA 1359402 25 100.0 46 ......................... ACTCTGAAAGGCATGTTTTTACACCCCCTCCATGCGGAAGCCTAGA 1359473 25 100.0 38 ......................... TTGGAATCCTTACAGCCATACATAAAATCACACCGCTA 1359536 25 100.0 44 ......................... CTCACAGCCTTCCTCGCTGCCTCCGCCTCTCCACCGAGCTTCTC 1359605 25 100.0 39 ......................... GTCTACAGCAAAGATACTCCAGCTAGACAACAACGGAGA 1359669 25 100.0 44 ......................... GCGGTACTTGGGGGTTGGCACCACGACCCGGTACCAGAGGCCCC 1359738 25 100.0 44 ......................... ACTCCGTTGAAGCGCTTCCTCACCCACTCCCTAAGACTCGACGT 1359807 25 92.0 44 ..................T.....A CTAGGCTTGTCCTCTTGGATGGACTGAGTAAGTGGACTTGAAAA 1359876 25 80.0 0 ..............G.GG.....GT | G,A [1359885,1359887] ========== ====== ====== ====== ========================= ================================================ ================== 14 25 98.0 44 GAATCATAACAAATAGAACTGAAAG # Left flank : CCCAGGCTCGCCCGGCTACTCGACAGACTACTAGCACTCACAAACACCCTCGGACTCGGCAGAAGCCGAGGCATAGGACTAGGAGACACACACGCACAATGGATACAACCCAAAAACAACAAAACAAAACCAAACCAGTAAACCACGAAACTAAAACAAGCCAAGATACATATTTAACACTACAACATACACACCCTCCCAGAAAAACACAGCCCATGACAGTAAGCTGTCGTGAACGGTTTAGAACCTCTTATTTCTAGCGGCCATAGCCCCAGGCACCAGGGGCAACACATAAATACCACTACACCCGTAAAACCGTTTAGAAAAACGCTAGACATGTAGAAACAACGCCATCGATGAGACCATCACCGATGATCACACTATTGCCTGGAATAGCTCCACCATAGACGCAATAAATAAACACCAGGAGAACCCAAGACTCCACAAAGCAAGGCATAAATATACGTAGCAAATACATAACATCAAGTGGACAACATGCA # Right flank : TAACTGGAGATGATGTGTAGTGGCTTCTCTCGATGCGGGGGGGGGGGGGCTTATTGTCTGGGGTGTTGGTGAGCTGGGGTTGTAGGGATGGTTGTGTTGCTGGGCTTTGTGGGTGTTTTTGGTGGCTTGCCTGTTTTAGTATATTTGGCGTGCTTTGAGCTCGTTGAGGGAGGCTTTGACGGCTTTGCGGGCTTCGTCGTATTTTAGGTAGGCTATGGCGGCGACTGCGAGTCCGAGTGCCACGTTTATCACTAGTAGGATGATTATGGCTGCGACGAGCCATGTCTTGGGCTCTGCGTAGTAGAGGACGCGTAGCGTGCCGTCGGTGTCTCTCCTCGTTGATATCACTATGCGTACTATGTCGTCGACTGTTATCCTGTCTGGTTCCTCTATTACGCTGAGGCCCCGGAACCGTAGTAGCTCGGCGAGCCTCCTCCTGGCGTCTTCCGCGGGCATTTCCACTATGTACTCGTGGCTGTCGAGCCGGAGCATTGACGCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATAACAAATAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //