Array 1 7-1011 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDX01000047.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N43460 N43460_contig_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 68 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 129 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 190 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 251 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 312 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 373 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 434 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 495 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 556 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 617 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 678 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 739 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 800 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 861 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 923 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 984 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-1910 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDX01000064.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N43460 N43460_contig_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 112 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 173 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 234 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 295 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 356 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 417 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 478 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 539 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 600 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 661 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 722 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 783 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 844 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 905 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 966 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 1027 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 1088 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 1149 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 1210 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 1271 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 1332 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 1393 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 1454 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 1515 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 1576 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 1637 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1698 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1759 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1820 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1881 29 96.6 0 A............................ | A [1907] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAAAAATTCGGCGCCAGCATCGCTGCGGATACTG # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //