Array 1 26470-27026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJB01000022.1 Clostridium sp. AM30-24 AM30-24.Scaf22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26470 32 96.9 34 ..........................G..... ACCCGCTCACTTACAACGGCACCGAGCAGCAGCC 26536 32 96.9 33 ..........................G..... TGGCAGCCCGAGCTTAAAGGCAACGTACCGAGC 26601 32 96.9 35 ..........................G..... ATCACCTCACTTTAGACAGAGTGGAAAACGCGGAT 26668 32 100.0 32 ................................ CAGTTGTTGACAATCTGCCCCGCGTGCAGCAC 26732 32 100.0 36 ................................ TAAGATCCCATGGGCAGTCAATGACTGGCGGCGGAT 26800 32 100.0 33 ................................ GACATTTACGTCATATTCCACTCCGTCCACGGT 26865 32 100.0 33 ................................ GAAGCTGCATACCGATTGCATTTCCCAGATGAT 26930 32 100.0 33 ................................ TGATCATACCCATACGGATATTCTTGTGGTTGT 26995 32 96.9 0 ..........................G..... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 98.6 34 ATTTCAACTCACAGCCCCGCAAGGGGACTGAC # Left flank : GTTCCTCATGCATTTTATTGATTGCGCATCATCTGAATACTAAAAAAAGCAGATGACGCCAAAACCATCATCTGCTCAAAACGATTCTATTCCATTGGGTCTGGGGCGCGTCACTCCGCTCCCGTCTTCCTCTGAGCTTTATCGTTTTTTCTTCCAAGTCTGCAATCGCAAATATATTGTCCCTGCACTTATTGACCGATTCACAAGATGATGTGTTTTTCAAACACTGATTATAAAGTAATCAACTTATAAATTTGAGCTTTTAACTCAATCAATAATGTGGGCTTAACCCCACGCGGCGCTTGACCCGCCTGTCCGATGGGCTTAACTTCCGTAGTCTGTTCTGCGGGAGTGGTCATTACATACATTTGCATGAAAACGATAAATGTCTCTTCACACTATTTTTATCATACATGAAAAACACGGGAACTGTCAAGTAAAAAATATTTTACCGCAAGGGGGCTGACCAGAGTCATCCATTTTCCCATCTGGTTCTTTCC # Right flank : CAGCAATTTTAGCCAAAAATATTGCCTGACCAAAATTGTTTTTTGTATTTATTTCACATATTTCTACTAATTTCCCCTCGCACTTTCAGGATTTCCATGGCCTTTAGGCTAAGATTTCCCTGTTTTTTCGGTGCGAATGTCCCGAGGTTTTTCTGTATACATACTTCTCGCACTATAATAGCAGCGTTTCCGTAACATCAAATCCCGGCTTAGCGCCAATATGTTCAACCTTATTTTTGTATTTCTCACCCAGATAATAGAATCTCAGACTGTCTACGTCTTTGTCGATGAGATTTTCAAGTATGTTTTTCACCTGTCTGCATTTTGCTGCATCCATCTGACATTCAAATACAGAATTCTGCACTCTCTGCCCATAGTTGGTGCATTCCTTTGCTACCTGACGCAAACGTTTTCTTCCTGCTGCCGTCTGTGTATTCACATCATAAGTAATCAAGACCAGCATTTATTCACCTACTTCCAGAAAAACGGCGGATATTCAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACAGCCCCGCAAGGGGACTGAC # Alternate repeat : ATTTCAACTCACAGCCCCGCAAGGGGGCTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 138327-139271 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJB01000001.1 Clostridium sp. AM30-24 AM30-24.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 138327 28 100.0 33 ............................ CTGATCACGAACCTTTTCCCAAGCCTTTTTAGT 138388 28 100.0 33 ............................ CGATAAAGGATCCGGACGAGCTGGATCGGCGGG 138449 28 100.0 33 ............................ TAGCCCGGTCCTCGGTTCGGTTACTGCTCTCTT 138510 28 100.0 34 ............................ TGAGTTGGCGAAAGAAATGTATAATCTTGGATTC 138572 28 100.0 34 ............................ CTTTGTGTGGATATTGATAAACCGGCTCACCTGA 138634 28 100.0 33 ............................ CGATCATCACGACATTTCACATCAAAAAACTTA 138695 28 100.0 33 ............................ CGGGGGTTGATTATGTATGGTTCAAAATTCAAA 138756 28 100.0 33 ............................ CGCGATCCGGAATAAGTCATGGGATGATAATGT 138817 28 100.0 33 ............................ TGATGCGTTCCGGGAGCCAATGCTTGGCGTATC 138878 28 100.0 33 ............................ CGCGATGACGCCGCACTTGGATCCGGAACAAAT 138939 28 100.0 33 ............................ TGCATTCGTTGTCATCATCCCAGCCGGTATTAT 139000 28 100.0 33 ............................ CAAGCAAAAGCAAAATAAAGAGGCCTTTAATGA 139061 28 96.4 33 ............T............... CAACTGTGTGACGGACAATGCCGGGCTTCCACT 139122 28 96.4 33 ............T............... TACTTAACAAGGCATATCAGCAAGGGTGGCTTG 139183 28 92.9 33 ............T...T........... TGGTGCGATGGAAGTGTGGTATGTAGAAAAGTA 139244 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.9 33 GTATTCCCCGCGCAAGCGGGGGTGATCC # Left flank : TCATCAGATGAGATTATTGAGTTGACGGCGATCAGAATCATTAACCACGAAATTGCAGACCAATTGGAGATTCTAGTAAAAACAGAAAAAGGAGTTCCAAAAGTAATTACTGAACTTACGGGGATTACAGAGGAGATTCTTGAGGAAAAGGGGGTGGTTCTTTCTTCGGCGATGGAGAAGTTCTGTAAATTTATTGGAGAAAGCGCAATAGTGGGACATAATATTGCATTTGATCGTAGCTTTTTAAAGGAGGCTTGTCGAAAGACCAATCGAATGAATCTGAAAAATCCAGCAAAAGATACATTAGATCTTGCTAGAAGGCGAATCGACGATATTGATGATTATAAGCTTCATGCACTGGCAGACTATTTCCAGATAAAAGTTGAGGAGGAACATAGGGCATTAAGTGATTGTATTACGACATTTCAAGTATATGAGAAACTAAATGAAATTTAGCGGCAGAGAGTGGAAAAATGCTGTAAATAAGGGATTCTTTTAGT # Right flank : CCGTATTAAAGCATGGGCCTCTAAAAAGAAAAAATCCATCCCCCCATTGCAATTCTCCGCTATTTTGCGTATACTTATAATATGAGTGGATAGATGCAGCCGCTATGTGTTGGGCATTTTGCCTGCCGTAGTAGAACGGGGCACTATCCACTTTTTTATGCCTATAAACAATCAATATGTGAGACGATGTTAAGAAAATATAAGTGTTCAGTTTATTTGCTAAGCATAATTTCAGCGGCAGAAGAAACACACAAAAGAATCTATAGCCCTCACGCGGACTCCCGCAGCAGCCGGATCAGCTCCTCCATCGCCGGAAGGGTCTGTTTCCCTTTCAACGTAACGATGGAGTAGCTGGTAGTATCAGCCGGATTTCCGATCCGGAAGCAGCGGACAGGCTTTGGATAGTGGAAATTTTTCATGTACTGGTAGAAGTTAAAAGCAATCCCATAGCCTTCTGCTGCGAGCTGACAGGCAGATTCAAGATTTTCAAGGAGAAAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //