Array 1 2121-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKMI01000043.1 Citrobacter braakii strain CB13459-7 13459-7_S13_contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2120 29 100.0 32 ............................. ACGAATCCTTGAGAGCTGGTATGGTCGCAATT 2059 29 100.0 32 ............................. ATTTTATAGGCACACCCGCCGATAAAATTGCA 1998 29 100.0 32 ............................. TTCTCGCGCAACGACAAAATGATGGAATTCTC 1937 29 100.0 32 ............................. CGCACATAGGAATTGCTGTGCCACATCGGCTG 1876 29 100.0 32 ............................. CGGTCCACGTGGCCGCTTTTCTTTTCAAAACG 1815 29 100.0 32 ............................. GGTCGTCACCAGCAGGATGTCGTTATCGGCGT 1754 29 100.0 32 ............................. CGGGAGTATATCTACCGTACCACAGGTAAAGA 1693 29 100.0 32 ............................. TTGATTGAAATGCTGAAAACTCGCCAATTCCG 1632 29 100.0 32 ............................. GGCTTTGAGTATCAACCTAACTGCCAGATCAA 1571 29 100.0 32 ............................. GTCAGCCAGCGTGGTGTCGATGTAGGCATAGC 1510 29 100.0 32 ............................. CATGCTGGTTACTGCCCAGGTCATCAGCGCCT 1449 29 100.0 32 ............................. AGCGGAAATTTAGCCTGATAACCATATGCAAA 1388 29 100.0 32 ............................. CACCGTTACCGGGTCGCCGATTTTCGGCGCGC 1327 29 100.0 32 ............................. TTTTTGCCGTTCGCCGGCTTCGCTTGCAACAC 1266 29 100.0 32 ............................. CCTTTAGCATCGCTGATCTTGCGAACACGCCG 1205 29 100.0 32 ............................. CATCTTGCGGGCTTCCCGTTCCGTTGGCGCGT 1144 29 100.0 32 ............................. GAGATCTCGACCATTGATATTTCCGTTATTGG 1083 29 100.0 32 ............................. CCACAATTTTAACCCCACGCAAAACGCCGTGA 1022 29 100.0 32 ............................. GCCAAAATCACCGGGGAGAATGAGGCGCAACC 961 29 100.0 32 ............................. GGCTTTCTCCGCTGCCATTTCTCATGATTACA 900 29 100.0 32 ............................. CGCGGCTAACTCACGATCTATACGCTCACCCA 839 29 100.0 32 ............................. TAGATCGCATTACGATTAGCGAGCTACATAGA 778 29 100.0 32 ............................. GCCACCAGCGGCCCTACGTTCGGCCGCTTCTT 717 29 100.0 32 ............................. GTCGTGCAGTACCAGCAACAGATGTTGATCAC 656 29 100.0 32 ............................. TCTAAATTTGAGTTTCACCCGGCGACGGGTGG 595 29 100.0 32 ............................. CAATGCCGCCTTCTTCCGTGCTCAGGCGGTGC 534 29 100.0 32 ............................. GTGGAGAGAGTGATAAGCGCCGTAGATATCGA 473 29 100.0 32 ............................. CGGGGACACCGGTGCGGGAGACAGTGAATCAG 412 29 100.0 32 ............................. TAGCCCTGCGTTACGTCAGCGCTACGAAACGT 351 29 100.0 32 ............................. AAGACGTTTAACTATTTACAGGACTGGATCCG 290 29 100.0 33 ............................. CTGATCACTATACCCTTGAATACCACGCTCAAG 228 29 100.0 32 ............................. GAATCTACCAGGTTAATGAGCATGGAGATGTC 167 29 100.0 32 ............................. ACTTCATCCGGATCCGCGATGAGTACCGGCGA 106 29 100.0 32 ............................. CAATCTATTCAGTTTGTGCGTCATACCATCAT 45 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTACTGGCTGCCGGGGAAATTGAAATCCCTAAACCTTTTGCAGATGCCCAACCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGGAATGTTGTTATGGCTTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCATCCTTCGTAAAATCAATGGGTTATATTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : TAAGCGTCGTCTGAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61-2102 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKMI01000056.1 Citrobacter braakii strain CB13459-7 13459-7_S13_contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61 29 100.0 32 ............................. AGGCACGTCTTCGGCAATTTGGCTGATACCCA 122 29 100.0 32 ............................. GATTTGATAAGCCGCTGATTGACACATCAAAC 183 29 100.0 32 ............................. GCGCTGGGGGAATTCACCCGCTACGGCAAATC 244 29 100.0 32 ............................. CCCGCCAAGATAAACCTCAACGAGCAATTCTT 305 29 100.0 32 ............................. CGGGAACCCACTGGCGTACAACACCAGTTCAG 366 29 100.0 32 ............................. GTATCAACCACATAGATATGACCATCACGCGG 427 29 100.0 32 ............................. TACTGAATGACTATGCCGAAACGCTGGAGAAC 488 29 100.0 32 ............................. TTGGCGATCATTTTCGGTAACAGCGGGGCCGC 549 29 100.0 32 ............................. CTGTTGCGCTCTGAACTCCGTCAGATTCACAA 610 29 100.0 32 ............................. TGGCCGCAACCGGAACAGGCGGCGCAGGCGGA 671 29 100.0 32 ............................. CTGGCCCGATAATTCTCCGCACTGTCGGTGGC 732 29 100.0 32 ............................. ACCTGGCGCCGGGTTTAAATCTTCCAGTACGC 793 29 100.0 32 ............................. TACCAACGTGTGCTGGTGGCACGATCTCGTGA 854 29 100.0 32 ............................. TTGCTTTTGCCATTCTGTTATCGCCCCTTATG 915 29 100.0 32 ............................. TCATCAGCCTTTACAACTGGTACATGCCCGTG 976 29 96.6 32 ..........T.................. TGCAGAGGGCGCGGCGCGCGCGCACTTCTCGG 1037 29 100.0 32 ............................. GGTGAGGGTTCTCCAATCGAGTTGGGCCTTGT 1098 29 100.0 32 ............................. TAAACGGCTCGGGCAAAAAATATCAGCAGCAG 1159 29 100.0 32 ............................. GGGCGATAAAGCAAACTTCCGGGACCGTTAGT 1220 29 100.0 32 ............................. CTCTTAATAAACGCGTTTAGCGGATTAGTCTC 1281 29 100.0 32 ............................. TTGAGCGTGCAATTCTGGAGCATGCCGGGCTG 1342 29 100.0 32 ............................. ATGTAGATATGGCCGCAGGTGGTTATATGCAG 1403 29 100.0 32 ............................. AGAACGGCGGCGGGTACTGGCTGGGCCGGATT 1464 29 100.0 32 ............................. CGGTACTTATCTTAGCCCACCGAACGCCGTCA 1525 29 100.0 32 ............................. GAATGGCCAATAATTTTAAATTCAGCCAGCGC 1586 29 100.0 32 ............................. AATTCATTGTCAGTATGTTGCTGTTGATAGTA 1647 29 100.0 32 ............................. AACGCAAACACACCCTTGATGCCGCTGAATTT 1708 29 100.0 32 ............................. AGTTGATGCGGCAAATCGTTGCGGCCGAAATG 1769 29 100.0 32 ............................. ATCACCTCGACTGTTCAAAACTCGATAGTAAA 1830 29 100.0 32 ............................. GCGGTCTCTATGTCGATGCGGTGGACTGAATA 1891 29 100.0 32 ............................. CTGGAAGTCCCGCGTGATGTGATGGATGTTTT 1952 29 96.6 32 ............A................ CCGGAGGTTCTGATGGTGTCCGAAACCATGTC 2013 29 93.1 32 ..T................A......... GAACATCCTGAAGTACACATCAAAAACGAACC 2074 29 86.2 0 ............T............T.TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTCACTGCACGCTTACGGATAAACCGCGTGTTTATCTCCAGCATTTCCCCGGCAGTAAG # Right flank : ACTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTTCCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACAGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //