Array 1 67852-67268 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSBO01000001.1 Phocaeicola vulgatus strain AF04-12 AF04-12.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 67851 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 67774 47 100.0 29 ............................................... TTCATAGGGAGTGGTGATATCTTTCATTA 67698 47 100.0 30 ............................................... TCCTTTGGCTCTTTTACAAGCATCTGGCTA 67621 47 100.0 30 ............................................... AGATGAGAAGATGAGGAGAGTTGAAGAATT 67544 47 100.0 30 ............................................... GCAAATCGCTCCTCATCGGTCATACCATCC 67467 47 100.0 30 ............................................... GGTAGTCAGATGGGATATTCTTTGTTGAAC 67390 47 100.0 29 ............................................... CATCCATATTCATAGTTCTACTCGAATCA 67314 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 63404-64683 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSBO01000025.1 Phocaeicola vulgatus strain AF04-12 AF04-12.Scaf25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 63404 33 97.0 34 ................................A GTATTAGTTGACAAATGGCATATAGTCTACCGTG 63471 33 100.0 31 ................................. TTCCATGGGTAGTGTTTGGCTTGCATCTCTG 63535 33 100.0 31 ................................. TTCCATGGGTAGTGTTTGGCTTGCATCTCTG 63599 33 100.0 31 ................................. TTCCATGGGTAGTGTTTGGCTTGCATCTCTG 63663 33 100.0 33 ................................. CTTTTGTCTTGTCAAAAGGGAATACCAGACTAT 63729 33 97.0 33 ................................A TGACTGTACGTATAGCCTTCTCCAGATTTCCTC 63795 33 100.0 32 ................................. TCCTCCTTTTTCTCATTTGGCGTTGAGGCTAT 63860 33 97.0 32 ................................A ATGCCATCCCCGAATATTCTAATCTCTGACAT 63925 33 100.0 33 ................................. TGGATGAACTACCAACGTGGCGGGGAGACCCAG 63991 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 64057 33 97.0 34 ................................A GTGATAGTAATATAGATAGTTTAGCGGTTGATAT 64124 33 97.0 33 ................................C CGAAGGCACTCCTTACATTGACGCTTATCCTGA 64190 33 100.0 32 ................................. GGTAATGATCGTCAACTCTGTGGGAGGATAGT 64255 33 100.0 32 ................................. CTCCTCCGTGTATAGTTGCATTTATATCTATT 64320 33 100.0 33 ................................. TCGCCTACTTGCAAGGTTACCGCCGTGAAGGAA 64386 33 97.0 32 ................................C AGAAGAATACCGGATATCTTGACAATCGTGAA 64451 33 97.0 33 ................................A ATCCCGTTGGGAGACATCCTCTCCCATTACGGT 64517 33 97.0 33 .............................G... CGAAATAGCGTAGCGATCCTTGCTCATCACAAG 64583 33 93.9 33 ........T.......................A CGCAATCCACCACTATCATAGCTCGGATGAACT 64649 33 90.9 0 ....................A.........G.A | TA [64668] ========== ====== ====== ====== ================================= ================================== ================== 20 33 98.0 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGACCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGTAAATATATTATATTTTTACTATACTTTCCCTTGTTGCTTATTTGTTATGTTGTTGATTATTAATGTGCTGTTATCTGTTTGTATCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //