Array 1 65946-64390 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETT01000008.1 Escherichia coli strain E497 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65945 29 100.0 32 ............................. GGTTCAACCTGCATTCACCGACGGCCATAAGG 65884 29 100.0 32 ............................. TACGTGTCGCCGTTACAGGTTTCAGTCTGTTA 65823 29 100.0 32 ............................. CCGTTGAAAAAATAAATTCATGCCTGGAAATC 65762 29 100.0 32 ............................. CGCGAGCTATCTCCGGTTATATCACTACTCCT 65701 29 100.0 32 ............................. TGGAATTTTTGCTCGGTCATGTCGAACCAGAA 65640 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 65579 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 65518 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 65457 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 65396 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 65335 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 65274 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 65213 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 65152 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 65091 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 65030 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 64969 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 64908 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 64846 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 64785 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 64724 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 64663 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 64602 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 64540 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 64479 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 64418 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92299-91660 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETT01000008.1 Escherichia coli strain E497 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92298 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 92237 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 92176 29 96.6 32 A............................ CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 92115 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 92054 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 91993 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 91932 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 91871 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 91810 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91749 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91688 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //