Array 1 6287-5262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLI010000002.1 Listeria innocua strain FSL W9-0285 NODE_2_length_480632_cov_95.139632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6286 36 100.0 30 .................................... TCGTTAATGTATCTCAACAACTGAAAGACT 6220 36 100.0 30 .................................... GATAAAAAAGTAAGATTCTATGTTGCTACT 6154 36 100.0 30 .................................... TATGTACATGCCCATCGTGTCAGCATCATG 6088 36 100.0 30 .................................... AGTGCAAGATATTACCCCTAGCACTTATAA 6022 36 100.0 30 .................................... TAAGAGGTTTCAGAACATAGCTGATTATCT 5956 36 100.0 30 .................................... TTCGTTTTTAATCTTTCGCCCATGGCTTTG 5890 36 100.0 30 .................................... TATATGACTGCAACCTTGAACTCTTTGTTC 5824 36 100.0 30 .................................... GTGTGAAATTAAAAGGCGGACAATTCGTGG 5758 36 100.0 30 .................................... ATCTAGCTTCTAAAGTCTTGTGTATTTCTC 5692 36 100.0 30 .................................... TGGTTCTTCCGCTTTCACAAGATACTTTTG 5626 36 100.0 30 .................................... AAGGCAGCAGCGTAACTAGAATTAAGTAAT 5560 36 100.0 30 .................................... CTTTGGCTCGACACTTCAACGCCATATTCT 5494 36 100.0 30 .................................... CTGTTAATGCCATTATTCTTCATCCTTCCT 5428 36 100.0 30 .................................... TCATTTCAAAGCGCGAAAGGGAATTATCGA 5362 36 100.0 30 .................................... ACAAGTGGAAACATTAGTATCTATGCAATA 5296 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : ACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACAAATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAATATTTTAACCCAACCTGTAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGTTAGTAAAGAAAGCGATACTCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACACCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1223225-1223000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLI010000001.1 Listeria innocua strain FSL W9-0285 NODE_1_length_1517252_cov_70.422614, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1223224 29 100.0 35 ............................. ACAATATGGTACGAGCGCATCGTTTGAGATTTACC 1223160 29 100.0 37 ............................. TCTCGAATTGCTCCTCCAGCAGCTTGCACCTTATCAA 1223094 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATTGAGCTATAACTGA 1223027 28 79.3 0 ............C..CA......A-...G | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 94.8 37 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAAACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAATCGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTAAAAATCACATTTTCAATCTATATCCATTAAAATATTGCTTTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGTAGTTTTATTCTATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //