Array 1 13051-14213 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHUY01000020.1 Pseudomonas sp. CMR5c PREFIX_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================= ================== 13051 28 100.0 32 ............................ GCCCCATTCGCACCATCCCCACCGCTGTTATC 13111 28 100.0 32 ............................ TTCATCTAGAGCCTGCTCCCAGGTGATGGCTT 13171 28 100.0 32 ............................ TGAAACAGTCGGCTAGCAGCGCCAGGACATAG 13231 28 100.0 32 ............................ AATTCCTTCAGGAATTCAAGATTCTCTCCATC 13291 28 100.0 32 ............................ GTGGGCCCGCGGTTGTTTTAGTTCATTTCCTG 13351 28 100.0 32 ............................ CAGTTCGTGATCGACGCTGCATTGATCATCTG 13411 28 100.0 32 ............................ AGAGAACGGTATTCGCGCCCTGGGCAAGCTTT 13471 28 100.0 32 ............................ GTTACACAAACTGCCTCTGAAGGCTGCACTCC 13531 28 100.0 32 ............................ AGCAGATTCAGCTCGAGTACTCCCACCAGGAA 13591 28 100.0 32 ............................ TGGAGAAATCCGCCGGCGAGCCGGTGACAGAG 13651 28 100.0 32 ............................ AAACGGCGCCGGTCATGCGGAACACCAGGCGC 13711 28 100.0 32 ............................ GAAGCGATGTATGCCGAGCTTACGCGCCTGAT 13771 28 100.0 32 ............................ AGCGACACCTTGGCCTTGGCCAGAGGGAAGCG 13831 28 100.0 32 ............................ TCAGAAACGAAAACCCCTGCATTTGCAGGGAT 13891 28 100.0 32 ............................ TTGCCGGCAGCACGCAGGGCCAGGATGCCGCG 13951 28 92.9 32 ..........C.......G......... ATAAAATTTCTACAGGTCCGCAATCCGGTGTA 14011 28 96.4 32 ...............A............ AGGAGTACTTGCTGCTTTGGAGGTTTGGCCAT 14071 28 92.9 87 ...........C.C.............. CCAGTCCTTCAGCGTCCATCGGTGCTGTTCATCTCGATTGCCGAACAGGCAGGCAAAACACAATCCATCATCAATCCATCGGCACCC 14186 27 85.7 0 ...-.........G........G...G. | T [14207] ========== ====== ====== ====== ============================ ======================================================================================= ================== 19 28 98.3 35 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCCCTGGGCCATTTGCTGGCCATCGATTGGCTGGCCGGCATGCGTGACCATGTAGAGATCGGCCAGCCCTGCTCGGTGCCGACGCCGGTGCAGCATCGCCATGTCAGCCGGGTACAGGTCGATAGCAGCCCGGCACGCCTGCGTCGCCGCCTGATCAAGCGCCATGGGTTGACCGAGGACCAAGCCCGCCAGCGCCTGCCCGACAGCGCGGCGAAACGTTGCGACCTGCCGTTCGCGGTGATGCGCAGCCATACCAGCCATCAGCTGTTCAACCTGTTCATCCGCCACGGCCCGCTGCTTGAACAACCACAGCCCGGCACGTTCAACGGCTATGGCCTGAGCTCCAGCGCGACAGTGCCCTGGTTCTGACCCTTTTTTTCGGGTGCAGTGGAGCGCTTTGTAAAATCAATGACTTACAAGGCGCTTCAAAAAAAGGGTGTACAGCAACTTTTAACAGCCTTTCTTTTGAAATTCAGGAGGTTATAGAGAAATTGCTCTA # Right flank : ACTTGATGCACTAATCGCTGGCTGGCCTGGGACTCCCGGGCCGGGCGCGTCTTTGTCACATCCCCTTCATCGGCGCTGGCTAAGGTGGCCTCTTTTGACCATGTCAGGGAGTCACCATGAGCGAGTTCAACCTCGGCCGTCGACGGATCATGCAAATCGCCGGGGCGGGGATGTTGCTGCCCAGCCTGGCGCCGGCGGTGATCGCCTCGGTCAAGGATCGGCCCAAGCTCACCGATGGCGTGCAGTCCGGGGACTTGCAGGGCGATCGGGCGATCATCTGGAGCCGCAGCGACCGCCCGGCGCGGATGGTGGTGGAGTGGGACACCCGCAGCATGTTCACCAACCCGCGACGCTTGGTCTCGCCACTGGCCGATGCCCGCACCGACTTCACCGCCCGGGTGGACCTGAGCGGGCTGCCGGTCAACCAGGCGATTTTTTATCGGGTGACCTTCGAGGACGCCCGCACCGGGGTGGCCAGCGAACCCTGGTTCGGCCATTTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //