Array 1 2903-4503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQNC01000001.1 Thermus caliditerrae strain YIM 77777 EI72DRAFT_scf7180000000018_quiver_dupTrim_6499.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2903 35 100.0 36 ................................... CTATGGCCTGTGTCCAGGCCGATGGGTCCGGGGCAA 2974 35 100.0 41 ................................... TTCCCCCCAACCAAGAGGCCCCGTATCTCCCGGTCGTCGTT 3050 35 100.0 41 ................................... TTCCTTGGGGTCGACGGGGTTCTCAAGTATGAAAGTTTCGG 3126 35 100.0 40 ................................... AAGACGTGCTTCTCGTGGAGAAGCTCCGCTTCGGCGAATG 3201 35 100.0 41 ................................... CCACCAACCGGATGTTGCCTTTTGTGAAGACGACCGACGAA 3277 35 100.0 41 ................................... GACTCTGCCGAGGTGTAGACCGGAACCCCTCCGGTCAGGTT 3353 35 100.0 39 ................................... ATCCGGCCTCGCTACGGAGGCCGGGCGGCTCAATTCCGA 3427 35 100.0 40 ................................... GAGGAGGCTGTCTACCTCCTCCATGTCCTCTATAGGCCAT 3502 35 100.0 40 ................................... TACTTCAACAATGAAGGTGTTCTTAGTGATGTGCTGCACG 3577 35 100.0 40 ................................... AGCCCAGCCTCACTACGGAGGCCGGGCGGCTCAACGCCGA 3652 35 100.0 37 ................................... CCCTCCATCCGCTTAACCACCACGGCCTTGGCCTCAT 3724 35 100.0 37 ................................... AAGAAAAACAACACTGCCTTCATTACCTCGGGGTCGG 3796 35 100.0 41 ................................... CCAAGCTCAAGGCGGAGGAGTGCCTCCGCCTGCCGGAGCTC 3872 35 97.1 41 .......................A........... TACGTTGCCGTCAGGGGTTATTAAGAGCCAATTGCCGTAAT 3948 35 100.0 38 ................................... AGCTCCTTGAGGAGTTCCTGCGCCTCCTCAAGGTCGTC 4021 35 100.0 39 ................................... AACCTTCTCGTTGTTGAACCTCCACTCTACACGCCACTC 4095 35 100.0 40 ................................... AGGGCCACTGGGAGCCCGTGGCCTCCAGCATAGCCAAAAG 4170 35 100.0 40 ................................... CTCCTCCTCCTCCAGTCCGAGCATACGGTCCATCTCCTTG 4245 35 100.0 39 ................................... CTATGTCCTCTACGGGCCAAACCTCCCCATCCGGGTAGA 4319 35 100.0 40 ................................... TCTCTGGTCCTAGGGCCGAAGCCCCAAGGACCCTTCCAGC 4394 35 100.0 40 ................................... ATGCTTTGGGTGGCGAAGCACCACCCAAAACACCCACGTC 4469 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 22 35 99.9 40 GTTGCACCTCTTTAGCCCCGTCAGGGGATTGAAAC # Left flank : TGAGCTACGACATACCCGATGACACCCGGCGTCTAAAAATGGCGACTCTCTTGAAAAGCTATGGAGAAAGGGTTCAGCTATCGGTGTTTGAGGCCGAGCTCAACCCTTATCAACTAAAGAACATGCTCGGCAAAGTGAGAGAACTCATGGAGCCAGAGGACTCGGTTAGGGTCTACCTGTTGGGGAAGGATTGGAAGAAGCGCACGCTCACCCTCGGACGAGCAACACCTTTGAGCTTTCCTGAAGACGACGTGATTTAAGTCATAGGGGTACGCAGACTATCCACTACGCTAAGTACAAGCCAGAAAGAAGACATTCAGCACAAGGCTTTTTGGAGCTTCCTAAGACTGAGTATAAGCACCCCCTTCGGCAGGCTTGACTAGGGCAACGTTTTTGGCTACTATCACATTAGGTTGGAAAGGGAAACGCAGACGAGCGTGTACCCCTTCGACCAAGTGGATCTTGAAAGTCTGGTGCAGGACGATGGTTTTAGAGGGGGG # Right flank : CGCCTCTTCATCTCTTGTCTCATGCTGGGATGAGAACTCCTCCGAGACGTCCCGACTGCGGATGGTTCTCACCTTAGACCTGGCCTGCTCAAAGCAGGGCCTCTTGCGCGCAGTCCCACTCACGGCTAGCCTGTTCACACGAGGGGCCAAGAATGCACCTTCTGCTGATCTCTTTGGTGGGCAACGACTCGGGGCCAGTAGCCCTTGCAGCCAAGTACCTCCGCAAGACCACACCCCGTGGGACGGACCTGTCTATTCTTCTAGTACAGGACGGCTCGCAAAACGTACCCCTACGGGAAGCTAGGCTCTCCGCCCTTCAGCATTGGTTGCAACAAGAGGGATTTTCCGTCCAGGTGCGAGAGTCCTTGGAGGCCGCACTTAACGAAAGCGCTGATTTTCCAGGCCGTGTCGTCTTGAACCTCACCGCCGGGGATAAAGCCTCTTTTTTCCGTTTTTACCAGTCAGCCAAGAAGCACGGCTGGGAAGCCCTGGTCATAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCTCTTTAGCCCCGTCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 18281-16877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQNC01000001.1 Thermus caliditerrae strain YIM 77777 EI72DRAFT_scf7180000000018_quiver_dupTrim_6499.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 18280 36 100.0 40 .................................... CCGTTGGCGAGGACCACCGCCGCATTCGCAAGGGTGCCCA 18204 36 100.0 41 .................................... CTCGCCGTATACGGCGAGCTCAGCGGGGCCCTTTGGCGCGT 18127 36 100.0 40 .................................... CCACAGGCGGGACTTTTGGATCGCCGTCTGGCGGATTGAG 18051 36 100.0 40 .................................... CCACAGGCGGGACTTTTGGATCGCCGTCTGGCGGATTGAG 17975 36 100.0 40 .................................... GCTTCACGCGGGCTCAGGCCGTGGAGCGGGCTGTGCAGGA 17899 36 100.0 39 .................................... GTGGAGGCCGGTTTGCGCCCTGCGGGTCAGTTCAACACG 17824 36 100.0 42 .................................... TCCACCACCGGCCAGATGAGGTGGGCGTACTGGGACCAGAGG 17746 36 100.0 41 .................................... GGAAGGTTTTGGGTTTTTCTCGGCTTTCCCTTCCCTCCCTT 17669 36 100.0 40 .................................... CCATAGCTACTGCATTAGGTGAGGCCGCGGAGCGCGAAAT 17593 36 100.0 37 .................................... ATCCGTTCATTGATATTTTGGTAACACCAGACTATGT 17520 36 100.0 38 .................................... CTTCAAACAAAGATTAGAAAACTAAGGCCGTTAAATAA 17446 36 100.0 40 .................................... CCAGGTATGTAATACCTGGTGTTGAGATCATAACGGCTAG 17370 36 100.0 40 .................................... AGCATAGAGCTACAATCCCCCCACACTACGCATAGCCGCT 17294 36 97.2 37 ..................................C. TCCGGCTGGAACGGCTCAGGGCGGGGAGCTTATCCCG 17221 36 100.0 41 .................................... TTGTTGAGCGTCCACGGCGGGGTGGAACGGCCCGCCATCCT 17144 36 100.0 39 .................................... CAGAGACACCACCTAGTGTCACAGAGACACCACCTAGTG 17069 36 100.0 40 .................................... AAGGAAACTTCGCGAGGTGCTCGCGGAGGCAATGGCCATT 16993 36 100.0 45 .................................... TAAGATGAAGAAGGTCCAGCTGTTCGGTCAATGGGCACACGGCAT 16912 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 19 36 99.9 40 GTCGCAATCCCCTTACGGGGCTAAACCTCGTGCAAC # Left flank : CCCCTTGAAGCCGAAGCTGGCGGAAGATGGGCCAAAGGGGCACCTCGGGCACGTTTCCCCCCTGGCCCTCCCCTTCCCGCTCCTGGGAGGCGTAGGTATCCGCCAGGGCCACGCACCACTCCTCGGGGGTTTGCGGCTGGTACTGGGGGCGGTCCCGCCAGCCCTCGTGGTGGCGGCTGGCGGTGCGCTCCAGCCACTTAGGGTCTATGCCGGCCTTCTGAAAGAGCCCGGCGTGTTGCCGAACGAAGAGGGCGGTGTAGGCGGTATGGGTGCGGTCGGGCATGCCCTCGTCCCGTTCCCCCCAGCGGGCGCGGGAGAGGAGCTTGCCCACGTCGTGAATCAGCGCTGCCAGTGCCACGTGGACTGGCTCTGCCATGAGGAAACTATACCCGCTTCCCCCCTCTTGCCGTGTGCGGTTTGCACTTCGCCGCGACTGCTCCCCAATCCCGCGGACGAGCGTCTCATTCCGAGACGGCTTGCGGCACGGGGCCGTTTTCCAA # Right flank : GGGTACCCCCTCTGCGCATCGTCCTGGAGCGGGCTCCCAAGGGGGGTATTTGTGAGAAGCATGAAGCTTGGAATATGCGAGGGGTGAATAACGGGGGTTTTTGAGGGTTCGCGCCCTTAGGAAGCCACAGGAGAAGGGGGCGATGAAAAGGGGAAAACGCATACTCACGTGCAGGACGGAGGAAGCTGGCTTTCAAGATGCCCGTCCGGGGTTCCGGACAGGCGCATTATACCAAATGGAGGCTGTAATGTACCGAGTCTAGGTTTTACCCCCAAACCTCTGCGCTCAAGGATACTTCGCTTGGTTGAAGCTTAGGACGCGCCTTTGCCCCGCAACAAAGCACACTTCTATAGCGGCTATCTTTGGCGCAAGTAAAAGGGCGTGTACCTCTCCCGGCCCAGGATGGCCGCCTTGAGGCGGTGGGCCTGGACCTCTATGAGCTCTTGGTAGGGCTTGCGGAAGCCTAAGGGGTGGGTGCCTAAGGCTCCTCCCAGGGAGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCCTTACGGGGCTAAACCTCGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 26316-25599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQNC01000001.1 Thermus caliditerrae strain YIM 77777 EI72DRAFT_scf7180000000018_quiver_dupTrim_6499.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 26315 36 100.0 38 .................................... GCGTCGCCGAACACCGCCCCGGCAAGCTCAATGCCGGG 26241 36 100.0 40 .................................... TTGAGGACCACCCACCAGGGCAGTCCTCCATGGCCTTTTG 26165 36 100.0 38 .................................... AGTCGCAGACATCGCACCTGGTATAGTGCTCGTGGTAG 26091 36 100.0 39 .................................... GAGGGCAGCACGGGGACGCCCAGGATCTCGGCGAACCGT 26016 36 100.0 38 .................................... AAAGCCCTTAAGGGCCACTTGGCGAGCCTCATCAATGG 25942 36 100.0 40 .................................... CATTTTTAACGAAAAGAAATATTTCTGATTTTTCTTTTTT 25866 36 97.2 42 ....A............................... GGCGCGCGCGTGTGCGCATGCGTGGGTGCGCGCGTGTGGGTG 25788 36 100.0 41 .................................... AACCTCGTAGTCCTTCACGTAGGCGCTGGCCATCTTCTCCA 25711 36 100.0 41 .................................... AACCTCGTAGTCCTTCACGTAGGCGCTGGCCATCTTCTCCA 25634 36 94.4 0 .................................T.T | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 99.2 40 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : GGAGGAGCGCTTCCTCCAGGAGTCCACCCACCCCCTGGGCTTCCGCAAGCCTTACCAAGAGCTCATAGAGACCCAGGCCCACCGCCTCAAGGCGGCCATCCTGGGCCGGGAGGGGTACACGCCCTTTTACTTGCGCCAACGATAGCCGCTATAGAAGTGTGCTTTGTTGCGGGGCAAAGGCGCGTCCTAAGCTTCAACCAAGCGAAGTATCCTTGAGCGCAGAGGTTTGGGGGTAAAACCTAGACTCGGTACATTACAGCCTCCATTTGGTATAATGCGCCTGTCCGGAACCCCGGACGGGCATCTTGAAAGCCAGCTTCCTCCGTCCCGCACGTGAATATGCGTTTTCCCTTCTCATCGCCCCTTTCTCCTGTCGCTTCCCAAGGGCGCTAACCCTCAAAAACCCCCGTTATTCACCCCTCGCATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTCGGGAGCCCGCTCCAGGACGATGTACAGAGGGGGTACCC # Right flank : CCTTATCCCATGAAGCGCCTGTATGCCATCGCCTATGACATCCCAGACGACACCCGCCGGGTGAAGCTGGCGAACCTCCTGAAGAGCTACGGAGAACGAGTTCAGCTTTCCGTGTTTGAGTGCTACTTGGACGAGAAGCTTCTGCAGGACCTCAAAGCCCAGGCTAAAAGACTCCTGGACCTTTCCCAAGATGCCCTGCGCATCTACGGGGTCCAGGGGGAGGTCCAGGTGCTGGGGGTGGGGCCTGTGTACGGGGATACGGGCTTCACCGTGGTATAGTGACCTTCTTGACCCGAGCGTGTGGTTCTCCCCTATAGCGCCTGAGCACTTCTTCCAGGCCCAAGCACGGGCGTACAGGAATGGGGCGGAAGGCCTTTGCCGCGGCGGGGGGCCACGCTCTGGTGCGCTCTGACCGGGACTGCTAGCGCTTCTCCGGGCTCAGCTTCCTTCGCCTGCTGTGTGAGCTTCCTCCACCAGGGCCCGCACTCTGGGCCACATCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 46358-47153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQNC01000001.1 Thermus caliditerrae strain YIM 77777 EI72DRAFT_scf7180000000018_quiver_dupTrim_6499.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 46358 36 100.0 35 .................................... TTATCTAGCACCAAGGTACACGTGGTGCTAGATAA 46429 36 100.0 42 .................................... ACCTCCTTGAGCGCTTCCCTAATAGCCTCCTTACCGCCAAGA 46507 36 100.0 40 .................................... TCAAACATCCTGGACGCGTAAACTAGGTCGTGCGTGAGGT 46583 36 100.0 38 .................................... CAAGAGGTGGGCCACCCCTGCTAAATCGGCTAGGTCCC 46657 36 100.0 35 .................................... TGTGGAGCGGGAGCGGCAGCGCAAAGCCCTTTTCG 46728 36 100.0 43 .................................... ACGATGGTTTGGTAACTCAACCCCGTGAGGACGGCTAGCTCCT 46807 36 100.0 41 .................................... TGTAGGGCGCTTTGGTAATCCCTGGTGGGCAATTCCTTACG 46884 36 100.0 42 .................................... TCTACGGGTACATCAGTACCCTCCCCCTCCTTTTCCAGGAGG 46962 36 100.0 40 .................................... CAGGTCCAGCAGGGGATGTCGTCTATGCGCCCCCACCCGT 47038 36 97.2 44 ..............................C..... ACCCAGAACCAGCCCCAGCCCATGCGGGGGCCGGTTGAGCCCGC 47118 36 91.7 0 ..............................C..A.A | ========== ====== ====== ====== ==================================== ============================================ ================== 11 36 99.0 40 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : ACCAGCCTTTCCCGTTTCATATCGGAAGGATACCGGCCTAGTACGCGCTAGCGCAAGCCCGTGGGGCGGAAGGGGTGGGAAGGGCCTCGAGGCGGCCATCCTGGGCCGGGAGAGGTACACGCCCTTTTACTTGCGCCAACGATAGCCGCTATAGAAGTGTGCTTTGTTGCGGGCCAAAGGCGCGTCCTAAGCTTGAACCAAGCGAAGTATCCTTGAGCGCAGAGGTTTGGGGGTAAAACCTAGACTCGGTACATTACAGCCTCCATTTGGTATAATGCACCTGTCCGGAACCCCGGACGGGCATCTTGAAAGCCAGCTTCCTCCGTCCCGCACGTGAATATGCGTTTTCCCTTCTCATCGCCCCTTTCTCCTGTGGCTTCCCAAGGGCGCGAACCCTCAAAAACCCCCGTTATTCACCCCTCGCATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTTGGGAGCCCGCTCCAGGACGATGTACAGAGGGGGTACCC # Right flank : AAACCAGGCCCCTCGAGGCCCCTACAAGGGCAACACCAGGGGCCTCTCCCGCCCAAAGTGCAGGAGGAGCACCCCTTCTCCCGACTCCAAGAGGGCCAGCAGAGCCTCCCGCATGCCCAGGAGGAGCTCCCGGTGGGCCTTGGGAAGCCCCGCCAAGGCCCTGTCCAGCCCCTCCGGCCCCTCCTCCCGCCACACGGCCAGGGCCTTCAGGGGGCGCTTCCCCCTCCTGGCCTCCCCGTAGGCCAGGGCCTCCTCCAAAAGGGCCTGGCGGTCCGGTGGGGGCGGGCCCTGGAGGCTAGGGGAGAGCTTGATCTCCACCGCCCCCACCCGCTCCCCCCGCAGGCGGTAGGTGCCGGGGGGAAGGAGGCGGGCGGGGTTGCGCCCTGGGGGAAAGTGCACCAGGAGGGTATGCCCCCGCACCTCTACCCGCACGTGGGTGGCCAGGGTGGGCACCTTGCGGGGAGCCTTCTCCTTGGCCGCGGGCTTGGCGGGAGGCTTCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //