Array 1 64427-66113 **** Predicted by CRISPRDetect 2.4 *** >NZ_POKD01000028.1 Streptococcus suis strain 1721 SS_1721_Contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 64427 36 100.0 30 .................................... TACAGCATTAGACATTATTAAACTCTTAGT 64493 36 100.0 30 .................................... CAACCAACTAGAAAAGCACTGTGTAAGGTA 64559 36 100.0 30 .................................... GCCAAGCCAACCAAGCACCCCAACAGGCAA 64625 36 100.0 30 .................................... ATGTTTAACTAATTCAACCAGTGTTTATAA 64691 36 100.0 30 .................................... AGGCTGTAACGGTGACATCGGTGCGGTTTT 64757 36 100.0 30 .................................... ATTTGGAAACAAATCGTTGGAATATACGCA 64823 36 100.0 30 .................................... CGTCTATCATGAGAATGATGACGATCATCA 64889 36 100.0 30 .................................... TGTAATATCCATCGGCTGGCCGCTGAACCC 64955 36 100.0 30 .................................... GTTAAATTTTCTGAATAATCAACTAATTTA 65021 36 100.0 30 .................................... TTGTAGATAGCCCAAACAATCAAACGGACG 65087 36 100.0 30 .................................... CCCTTAATATTACCGAGGCAGGCAAGGTTC 65153 36 100.0 30 .................................... TAAAAAATCAATCGGTAAATGTTGTCTAAT 65219 36 100.0 30 .................................... CCTCAACCGTGTTGCTCATTACTACCACAG 65285 36 100.0 30 .................................... TAGGCAACATACTATCTCCACGAACGCCTA 65351 36 100.0 30 .................................... TTATTTTAATTATCTAAATTCTTTCTATAG 65417 36 100.0 30 .................................... TAAAAAATCAATCGGTAAATGTTGTCTAAT 65483 36 100.0 30 .................................... CCTCAACCGTGTTGCTCATTACTACCACAG 65549 36 100.0 30 .................................... AGATATATTTCAGATTGCAAAATCCTGGTA 65615 36 100.0 30 .................................... TCTATTCAGAGAACAATGGAAACATTGAAC 65681 36 100.0 31 .................................... TAAAGGTCCATGGGTACATGAACAGGAACAT 65748 36 100.0 30 .................................... TGGCATCTTCTTGATTTGTTCTTCTTTATT 65814 36 100.0 30 .................................... AGGACATCAACAAGTGATTTACCATCTTCA 65880 36 100.0 30 .................................... CGCCACAAGTTATTTTTCTACAACTGTGCT 65946 36 100.0 30 .................................... TATGCACCAAGTCAACTGCCAAAATGTCAT 66012 36 100.0 30 .................................... GGGACTGGTGCTTGATATTCTTTCTGGAGT 66078 35 88.9 0 .........................A.-.A.....G | T [66111] ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAACCTGCATTTATATCATTGTTTTAATTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGGCGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //