Array 1 521961-520057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYB010000001.1 Salmonella enterica strain S15BD05371 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 521960 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 521899 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 521838 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 521777 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 521716 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 521655 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 521594 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 521532 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 521471 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 521410 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 521349 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 521288 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 521227 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 521166 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 521105 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 521044 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 520983 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 520922 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 520861 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 520800 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 520738 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 520635 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 520574 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 520513 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 520452 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 520391 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 520330 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 520269 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 520208 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 520147 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 520086 29 96.6 0 A............................ | A [520059] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 539584-538091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYB010000001.1 Salmonella enterica strain S15BD05371 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 539583 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 539522 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 539461 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 539400 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 539339 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 539278 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 539217 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 539156 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 539095 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 539034 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 538973 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 538912 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 538851 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 538790 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 538729 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 538668 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 538606 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 538545 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 538484 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 538423 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 538362 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 538301 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 538240 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 538179 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 538118 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //