Array 1 2628-4841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUN010000019.1 Lacticaseibacillus paracasei strain cek-R2 PairedContig_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2628 36 100.0 30 .................................... GCTAGGTGTATGGCGCGTTGAGGAGACAGG 2694 36 100.0 30 .................................... CAGAATCATCGCGTCTTACTTTAGACACCA 2760 36 100.0 30 .................................... CGATATTGAGCCGAACCAGCCCGTGATCTG 2826 36 100.0 30 .................................... TCCTGCATTTGGCCATAGGACTTCAATGTC 2892 36 100.0 30 .................................... GCACCAAAGTTGCAGTTTAAGGTGGCGTAT 2958 36 100.0 30 .................................... AGTTTCATTCATCGCTTCAACCAACCGCTG 3024 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 3090 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 3156 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 3222 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 3288 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 3354 36 100.0 30 .................................... AAAGCGTTCGCTTTGATATATCAAAATTAG 3420 36 100.0 30 .................................... TCAAGATAGACCCCGTTAAATTGGGTGAAT 3486 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 3552 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 3618 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 3684 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 3750 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 3816 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 3882 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 3948 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 4014 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 4080 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 4146 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 4212 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 4278 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 4344 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 4410 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 4476 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 4542 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 4608 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 4674 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 4740 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 4806 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : CAAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACAAAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //