Array 1 55798-53633 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNZ01000012.1 Klebsiella quasivariicola strain VRCO0168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55797 29 100.0 32 ............................. CTGGGACAGTCTCCGCGTGGGACAAACTTAAA 55736 29 100.0 32 ............................. ACGCCCGCGCGGGGTCTGCCCTCATTGCGGAA 55675 29 100.0 32 ............................. CGGATCGTGCTGCAGCATATCCCGGACGGCGT 55614 29 96.6 32 ............................A CCGTTATCAGCCAGGATACCAGGTTCTCACGC 55553 29 100.0 32 ............................. GCAGATCACCAGCCTACAGGCCATCTTCCAGA 55492 29 100.0 32 ............................. CAGGCGGGGCAACCTCGACGCAGCGCGCCGGA 55431 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCGGGCCAGTT 55370 29 100.0 32 ............................. GCGGGCATCTCTCGTGCCGGTCGCACCGCGCC 55309 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 55248 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 55187 29 100.0 32 ............................. CCTCGTCTCCAACCGGCTGCTCGTTGAAGTTG 55126 29 96.6 32 ............T................ GATCAGATGTACCCCATCTTCAGTTGGGGATG 55065 29 100.0 32 ............................. AGTCAAGACCGGTACCGCGGCGGATATCCTGA 55004 29 100.0 32 ............................. GCGGTTACGTTGTGCTGGATATCTCCCTGAAA 54943 29 100.0 32 ............................. AGGGGCTGACACGTGCCGGCCAACTGTCCCCC 54882 29 100.0 32 ............................. GATGAAATTTAGGTGCGCACCACTTTTCATAT 54821 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 54760 29 100.0 32 ............................. GCAAAAGATGACTGGTTAATGTCACCGCGCAT 54699 29 100.0 32 ............................. CCACGGTGTCAGCGTGCAACTCGTCGTGATGC 54638 29 96.6 33 .............A............... CGCATGCAGAAAACCGCGACGCGACTTTTAGGC 54576 29 100.0 32 ............................. TAATCAAACGACGCATTACCGGGGTTTCAGAA 54515 29 100.0 32 ............................. CAGGCGCTGCAGAAAATGTACCAGGACGATCT 54454 29 100.0 32 ............................. CAAATGATTCGCGCGACTAAAGTTGCAGCCCG 54393 29 100.0 32 ............................. AAAAAACTGGTCTTGAAGGGCTTGACCCGAAA 54332 29 100.0 32 ............................. TCGCCGTACCAGAAGGATATTTGTTTTAATCT 54271 29 100.0 32 ............................. GTTCGCACTGTTATCCAATCGTGGAGGAAATT 54210 29 100.0 32 ............................. TTAGTAAACGTTGCACCCATGCGGCCAAGTGT 54149 29 100.0 32 ............................. GCGTGGTGCCGAGCAGCATCATCCCATATAAA 54088 29 100.0 32 ............................. GAATTTGCATGAATACCGGATCCGCTCTCGCA 54027 29 100.0 32 ............................. GCTCAAATAACAGACGAACGTTTGGCAAAAAT 53966 29 100.0 32 ............................. TCAATACATTTGAAGCTGCTTTTGCTCCTTTT 53905 29 100.0 32 ............................. CGCTCTAAATTTTGGGCTTCTGGATATGATGT 53844 29 100.0 32 ............................. GTTCACGATCTCTTTGTCGGCTTCCTCGATAA 53783 29 100.0 32 ............................. AAATCATCAACGGCTCCAACACGACCGTTAAC 53722 29 96.6 32 ..A.......................... TTAACGGACAGACGTTGCTCAACGTAGTCCGA 53661 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : GCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAACGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48468-47403 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNZ01000003.1 Klebsiella quasivariicola strain VRCO0168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48467 28 100.0 33 ............................ CATCGTGCAGGCCATCGCCCGCGACGTCCTGGC 48406 28 100.0 33 ............................ TCTTTCAGGCGGCGGCGCTCCCGCTGCAGGTAG 48345 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 48284 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 48223 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 48162 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 48101 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 48040 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 47979 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 47918 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 47857 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 47796 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 47735 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 47674 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 47613 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 47552 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 47491 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 47430 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATATAAAGAACGACTCTGTATCGATCTGGCTTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTTATTGCCGCCGATATCAATGAGCTAATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAAGATTCGGTTGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57767-57130 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWNZ01000003.1 Klebsiella quasivariicola strain VRCO0168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 57766 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 57705 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 57644 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 57582 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 57521 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 57460 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 57399 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 57338 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 57277 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 57216 27 92.9 33 .............A.......-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 57156 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGCGTGGGGGTGTTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //