Array 1 70778-69873 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAP01000026.1 Legionella pneumophila strain D5739 D5739_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 70777 37 100.0 35 ..................................... GTGATTTCCATTTAAATATATCCTTTAACCTGATC 70705 37 100.0 35 ..................................... TTAGTCGCAGTTCCACTATTTGCAACAGTTAAACC 70633 37 100.0 35 ..................................... GCTATAACGGATTCGGATTGCCTGTTAGCAATACA 70561 37 100.0 38 ..................................... ATTGCTACTGAAGTGTTATTCGATGTCGCTTACACACC 70486 37 100.0 37 ..................................... TATGTAGATATCGCTGCCACTGAACATATTAGCACAT 70412 37 100.0 37 ..................................... TAAGTATAACCTGTGACGTTTCCTGAAACGCCTCCGG 70338 37 100.0 35 ..................................... AACTTGCTTGCTGATACTGCTATGAAGCGCAAAGA 70266 37 97.3 36 .........T........................... GAAAAACGATTAACGTGATCTATCAAACCAGTTTTT 70193 37 100.0 34 ..................................... GTTAAGTTAACGCTATTGGGCATCTCTTTGACAT 70122 37 100.0 35 ..................................... TATACAGTCATGAATCATACCTCTTTGGTTTTGCC 70050 37 97.3 35 .....................T............... TGGTATTGATTGCCGCCTCTAGCGTTTCTAACGAT 69978 37 100.0 32 ..................................... TGCACATAGCATTTGAATTAATTTGTGTGACT 69909 37 86.5 0 .......................TT...T.A.....T | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 98.5 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : AAAATCCAACCACTGAAACGCAGGCTACGGTGACGCATTAATCACCACGCCA # Right flank : ACTCCATATTTTATTCTCTGTATACTATTATAGTAAAACTCCATGGAGGTATTATTTTATATAATTAAACAGAATTTAATTTTGTTGTATTTTAATTTCTTCGACAAACATCAGAAAATATAATCGGCCATTTTTACCGATTATTTGTAAATGTTAGATGCAGTTTTAGGGACACAATAGGTCATATTTGGTTATATTTGCTTTTTTTCATCTTATTTATTTTATAATTAACTTGATAATTATAAAGTGCTATTTTACTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAGATTATCTTTGTAACAAATTTTCTTAATTTAATTTTCAAAACCATGCCCAACACCGGATTGTCTTTTGTTTTGTACATCTCAACTGAATATAATACTAGTGAATTTATTTTATTAGATAATTATTTCAGTAAGTTCTAATATTCAGGACTAATTTCCCAAGAATATTAACCTCAGCAATATCACTCACTTTAAGGCAAAGAGCAAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 6482-7597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAP01000018.1 Legionella pneumophila strain D5739 D5739_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6482 37 100.0 34 ..................................... TCGGCTGTCTCTCGTGTTCCTTGGGCACTTTCTA 6553 37 100.0 35 ..................................... TGGAGTGTCGATTCACGCAAGACAGCGTGGACGGT 6625 37 100.0 34 ..................................... TAAAAATCAAATCCACTAAAATGATTGAAATACC 6696 37 100.0 40 ..................................... TTTGAAATACAGGTGATAAATGAAAGTCGGGTATTGTAAC 6773 37 100.0 34 ..................................... CTATTCGTTTTTTAGTAATTTCATAATATTCTTT 6844 37 100.0 35 ..................................... TTTGATATTGCCGTTCATTCTGAATAAACGTCTTA 6916 37 100.0 34 ..................................... ATTTTAGATATTGCTCCAAGGTCATCGTTTCAGT 6987 37 100.0 36 ..................................... CTAACTGGCTAAAGTCAATCTGTACACAAGTCCAAC 7060 37 100.0 35 ..................................... TCCAATAAGCTTACGCTTTGCATCTAGTTCTAAGC 7132 37 100.0 34 ..................................... ACTAGTGACTTCTCTACCCAGGTTAGGATCATAG 7203 37 100.0 34 ..................................... TAAAGGGCTAGTTTTTAGTAATTTAATAGGGTTG 7274 37 100.0 35 ..................................... CAATAGTAAGTTCACAACGTGGACAAGTATTATAA 7346 37 100.0 33 ..................................... TAAAAACCTCAATCAATTACCACCTTGATAAAG 7416 37 100.0 34 ..................................... TTCGATGGCTCATAACCTGACATTAATTTATCAA 7487 37 100.0 37 ..................................... CGTTTATTGTAATAGAAGTATCTACTCCCGCGCCTAA 7561 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 100.0 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGATGAAAAATCAAAGTTCAAAGTGCTTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : CACAATATTTAGGGTTATACTCGGAATTAGCTGCCCCAATAATCCCTCATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //