Array 1 106238-107058 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFM01000009.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44706 N44706_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106238 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 106299 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 106360 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 106421 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 106482 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 106543 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 106604 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 106665 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 106726 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 106787 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 106848 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 106909 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 106970 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 107031 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123317-124980 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFM01000009.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44706 N44706_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 123317 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 123378 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 123439 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 123500 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 123567 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 123628 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 123689 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 123750 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 123811 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 123872 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 123933 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 123994 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 124055 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 124116 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 124177 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 124238 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 124299 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 124360 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 124421 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 124524 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 124585 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 124646 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 124707 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 124768 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 124829 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 124890 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 124951 29 96.6 0 A............................ | A [124977] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //