Array 1 164116-163231 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDY01000001.1 Salmonella enterica strain BCW_2646 NODE_1_length_616169_cov_3.47691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164115 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 164054 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 163993 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 163932 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 163870 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 163809 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 163748 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 163687 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 163626 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 163565 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 163504 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 163443 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 163382 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 163321 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 163260 29 93.1 0 ............TC............... | A [163233] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182122-180386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDY01000001.1 Salmonella enterica strain BCW_2646 NODE_1_length_616169_cov_3.47691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182121 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 182060 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 181999 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 181938 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 181877 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 181816 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 181755 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 181694 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 181633 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 181572 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 181511 29 100.0 32 ............................. GATGCGATCAGGCTGGCGATCAAGCAGATGTC 181450 29 100.0 32 ............................. ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 181389 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 181328 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 181267 29 100.0 32 ............................. GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 181206 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 181145 29 96.6 32 ..G.......................... AATTGATCACAATCCTGTATAAGCTGCGCAAA 181084 29 96.6 32 ..G.......................... AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 181023 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 180962 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 180901 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 180840 29 93.1 32 ..G.....................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 180779 29 93.1 32 ..G..........T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 180718 29 89.7 32 ..G..........T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 180657 29 96.6 32 ..G.......................... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 180596 29 96.6 32 ..G.......................... CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 180535 29 96.6 32 ..G.......................... TGGGACATTCTCGCTAGTCACGGTCATGTCAT 180474 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 180413 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //