Array 1 76435-75308 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFC01000167.1 Escherichia coli strain OU-NP013 sequence167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76434 29 100.0 32 ............................. CAAAATTTATGCGCAAGAGATGAGCTTGTATC 76373 29 100.0 32 ............................. CTGTATCGCTAATTAAACTGTTGATCAGCGAT 76312 29 100.0 32 ............................. CTATGGAACTCTGGCAAGCACACACCATTCAA 76251 29 100.0 32 ............................. TGACTGCGCAGGGATTGCGGGAAGTGGTACGT 76190 29 100.0 32 ............................. TAAACAGTATTCCAGTTTTGTGGCCGTAATGT 76129 29 100.0 32 ............................. TGCTGTTTTTCTGCGGGATTGACACGGTGCGA 76068 29 100.0 32 ............................. ATCGAGTAGCTGTGCGGGCTGGTGGATTCTGA 76007 29 100.0 32 ............................. TTGTAGTCGAAATCAACAGGGGTACTTTTCTG 75946 29 100.0 32 ............................. TACGCGACCAACCTGGGCCTGCCGACGTTCGG 75885 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTTCCGTAAATCTG 75824 29 96.6 32 ............................T CTGCGCGCCATCGCCCATGTAGAACGCCTGAC 75763 29 100.0 32 ............................. GCGAAACGGTTAAAATACACTCCATTCAGGAA 75702 29 100.0 32 ............................. TTAGCTATCAGAGTGGTGGCGCGCCGCCGCCA 75641 29 100.0 32 ............................. GCACCATTTGGGAGCCCGGTAACACAATGAAC 75580 29 100.0 32 ............................. ATTTTGGGTGGCAACCAGGCAGATGAAGTAAA 75519 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGCTA 75458 29 100.0 32 ............................. GCTGCTGTCGGTGTGATGAAGAAGGGAATCTC 75397 29 96.6 32 ..A.......................... TCGTCAAAAGACACGTCGCACTGAAAAAAATC 75336 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCACGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGAGGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 126-276 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFC01000250.1 Escherichia coli strain OU-NP013 sequence250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126 29 96.6 32 ........A.................... CAAAATTTATGCGCAAGGGGTGAGCTTGTATC 187 29 100.0 32 ............................. CTGTATCGCTAATTAAACTGTTGATCAGCGAT 248 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTTTTTTTTTTTTTTGTTAATAAAAGGGTTTTTGGTTTTTTAAAAAAAAGGAAAGGTTTGGATTGTTTGGGTGGGTTGTTGGGGTGGAAAAAAGTTTTTTAAAAACAGATATGGGTGCTTAGTG # Right flank : CTATGGAACTCTGGCAAGCACACACCATTCAAGTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21538-22589 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFC01000004.1 Escherichia coli strain OU-NP013 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================================================================================== ================== 21538 28 100.0 32 ............................ AGGCAATATTTCGCGCGGGGCCACGCACACAA 21598 28 100.0 32 ............................ GAAAATATCCGGTGTGCGGCGCGCGGCTACTC 21658 28 100.0 32 ............................ AGAGTTCGTAGCGCCTCAGGCTTGAATTTATC 21718 28 100.0 32 ............................ CTGAGCGTATTATAGAGGCTATTCAGTACGTT 21778 28 100.0 32 ............................ TGCAATATTATGGCGCTTCATTAGACTGAATA 21838 28 100.0 32 ............................ ACGTTTTACCGGTCGCCGTCGCGGGCGTTATT 21898 28 100.0 32 ............................ AACAAACCCGATCCCCAGCCGCTCAAATATCC 21958 28 100.0 33 ............................ CTGAATCTGGTTTGTTCAGCCCAGCGCCATGAA 22019 28 100.0 32 ............................ ACAAATAGCCATCGCCATACCGCTGTCGCTAT 22079 28 100.0 32 ............................ GAATAAAAGTCAGTCAGAGCTTGAAGAAATGA 22139 28 100.0 32 ............................ TCTGACCTTCTTGCTGGACGACTTGATGTAAC 22199 28 100.0 32 ............................ ATTGAGCACCCCCAGCGAGAGCCGGGGAAACT 22259 28 82.1 213 .....................AC.T.TT TAACTATGGGTATTCTATGACGGAAAAAACGCACGGTTTATCTGGCAGACGTAGTAACGCTGCAAAAGAAAAAACCGCAAATGCAACAATTCAAATCCGCGTTATGCCAGAGCTTAAAGCGCATTACGTTGCTCTCGCAGAAAAGGCCGGGCTTTCGTTGAGTAGCTGGATTCTGTTGGCCGCCGAAGAAAAAGCGGCACAAAAATAAATTTT 22500 28 100.0 33 ............................ ACACTTATGGCGAAGTAACAAAGGTTGAAATGT 22561 28 92.9 0 ....................T...C... | C [22584] ========== ====== ====== ====== ============================ ===================================================================================================================================================================================================================== ================== 15 28 98.3 45 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCTCTTGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATATGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACGCCGAACCATTAGCTTCAGTACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTAAGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGATTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCTAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAA # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-1.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31848-32296 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFC01000004.1 Escherichia coli strain OU-NP013 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31848 28 100.0 32 ............................ CTCGACGATTGACCACGGCCCCAGCGCGATTG 31908 28 100.0 32 ............................ TCCCAGCGCTGCCGCTCCGCATCGATACAGGG 31968 28 100.0 32 ............................ AGAAATTATCGCGGCAATGCAAAAGCTGGATA 32028 28 100.0 32 ............................ AGATCGAGTGCCTCCGGGCGTAGCCGGTGGTG 32088 28 100.0 33 ............................ ACCTTAATATTCGCCCGGCATTTTTGCTGGTTT 32149 28 100.0 32 ............................ TCAAGCCAGACAGAATCAACGGGTTCAACAAT 32209 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTTGAGCTTCCAGC 32269 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATATTATTTACTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTGGAATATTTATTCCCCGTAACTCTCAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 751-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFC01000100.1 Escherichia coli strain OU-NP013 sequence100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 750 29 100.0 32 ............................. TGAAACATAGTACTAATCTGTTTATTTGCGTT 689 29 100.0 33 ............................. TTCCAGATTGATCCAGAGGATATGGAACACGCC 627 29 100.0 32 ............................. AACTTTGTCGGGTCGCCCGTGCGTCATAATGA 566 29 100.0 32 ............................. TTTGCCGACTGAATCCGCGTCCGTCGCCTCAG 505 29 100.0 32 ............................. TCCCAGCATTGCTACGCCGTTGCGAGTGTCTC 444 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 383 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 322 29 100.0 32 ............................. CGATCTTTTCCTACCTGGTACAATCAGTAAAT 261 29 93.1 32 .T..........G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 200 29 93.1 0 A...........................A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //