Array 1 239002-240553 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANFD01000015.1 Streptococcus agalactiae str. Gottschalk 999B ctg120003123998, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 239002 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 239068 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 239134 36 100.0 30 .................................... ACGGCACTTTTAACCGTCTCTCCGCTTCTT 239200 36 100.0 29 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCG 239265 36 100.0 29 .................................... CTTATGGGAGTTCTTGCAATATTAGTTGT 239330 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 239396 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 239462 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 239528 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 239594 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 239660 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 239726 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 239792 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 239858 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 239924 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 239990 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 240056 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 240122 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 240188 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 240254 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 240320 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 240386 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 240452 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 240518 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 43855-44348 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANFD01000005.1 Streptococcus agalactiae str. Gottschalk 999B ctg120003123988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 43855 32 100.0 34 ................................ ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 43921 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 43988 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 44054 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 44120 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 44186 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 44253 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 44318 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //