Array 1 18410-19755 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKU01000006.1 Campylobacter sp. P0209 .15277_6_58.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 18410 37 100.0 35 ..................................... AAGCGTTATAAGGACTGTAAGCACTTTTGGCTGAT 18482 37 100.0 37 ..................................... AATATCACTACAATGCAAAATAGCATAAACACGATAA 18556 37 100.0 36 ..................................... TATTACGCTTGACGCAGTTATTATTCTATTATTTAA 18629 37 100.0 37 ..................................... CCCTTTGTAGCTAATCACGGCTTCTGCGTCTTGTTTA 18703 37 100.0 35 ..................................... ATAAACTTCATTAGTTTTCTCATAAGTTTCATCAT 18775 37 100.0 34 ..................................... ATTTTACAATCTCTGACGGTAGCCAAAATTATAT 18846 37 100.0 35 ..................................... TTTTCTTAATACATATTCCCACACGCTCTCTGTTG 18918 37 100.0 37 ..................................... TATGTAGCCACATTAGCACACATAAAATCGTGGATTA 18992 37 100.0 34 ..................................... GATTGCTTTCCGGTTTAAATAGCTTATAAATATA 19063 37 100.0 35 ..................................... CTATTGCGTAAAATGGAGCAAATGCTAAAGTTGAA 19135 37 100.0 35 ..................................... AATTTATGGGATTTATTAATGCTTATTAATAATAA 19207 37 100.0 34 ..................................... GTTGCGATTATATTTGCGGTTACTGCTGATTGAA 19278 37 100.0 36 ..................................... GTTATTTTAGCTATCTCAAAAGGCGTGATTGGCTGT 19351 37 100.0 40 ..................................... CGCTATGGGCGAATTAATACATATAGCACAGAGATTTTAA 19428 37 100.0 36 ..................................... CTTCAGCAGTAATTAGCAATCAAAACAGCATATCTA 19501 37 100.0 37 ..................................... TTATAACAAAGACGAATTGGCGAAATATCGTGAATTT 19575 37 100.0 35 ..................................... TGGGGATTTTAGCGTAATATTGATGATAATCAAAA 19647 37 100.0 36 ..................................... CTCCGCCCAGTCAGACTGGCTGAAATGCTGATTAGG 19720 36 89.2 0 ...........................A.C..-...T | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.4 36 GTTGCAAATTATACCACAAATCAACTCGGTTTGAAAC # Left flank : AAATCAAAACAAGCCAATACTAAATAAAGGCACTAAAATGCAGCTTATAGCCTACTCAAAGCTAGCTAGTAAGCATTTTAATAAACCATTTTTTAAGATAATGCTAATTTGTAGTAATAATCTTAAATTTAAGATATTTGATATAAACAGTGATGATTTAGCCCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGCTATTTCCGCAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATGATACCGGGGGTGCCATATGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTATAGTATAATTTGCGTTTGTATTATAGCTAAATTTTTCCACAAATTCGCTATTTTTAGCATTTTTTTTCAAAGTGGAAGAATTAAGACCTTTAAACTATAGCCAAACGCCCATAAAATAGGCTAAATTTAGCTCA # Right flank : TAGGTGTCTAGTTTATAAATTAGACACCATCGAATTTATCATAAATAAATTTAGCTTGGAATTAAAATTAAATTAATGCTTTGCTAAATAGTTTGTATCATATAAATTATTGATAAAATCATCATTATTCATCATATTTATATGGAAATCTTTTGTAGTTTTAATCCCTTGTATGATTAGCTCATCAAGTGCTACTTTCATCTTGGCAATAGCTCTATTTCTATCTATATCATGGACGATTAATTTGCCTATCATACTATCATAATACGGCGGAACGCTATAACCCTCATAAACATGGCTATCCATTCTGACATTTCTACCGCCTGGGGCGACATATTTTGTGATTTTACCTGGATTTGGGGTAAAGCTTTTTGGGTCTTCGGCTGTGATTCTACACTCTATTGAGTGGCCACTTAATTTGATATCTTTTTGCTCTGGCAATCTCTCTCCTTGTGAGATTCGTATCATCCACTCTATCAAGTCTAATCCGCTACACATTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAATCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 135307-135945 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKU01000002.1 Campylobacter sp. P0209 .15277_6_58.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 135307 39 71.8 36 ..G...A..GT......G....CA.G..AC........G CTTTTAGCATTTTCAAACATATGATCCATATATTTA 135382 39 76.9 36 ........G.T.......C...C..GT..C..G..A... CCAGAACATCCACTAAACATATATTTAATATTAGTT 135457 39 100.0 36 ....................................... CTAGAACATCCACTAAACATATATTGCATATCAATT 135532 39 100.0 36 ....................................... GTTGAGCATCCGCCAAACATACCGCACATACTGGCG 135607 39 100.0 36 ....................................... GTTGAGCATCCATCAAACATATACATCATATAGGTA 135682 39 87.2 36 .............C...GC...C..G............. TTAGAGCATTTGCTAAACATAAAAGACATACTGGTA 135757 39 82.1 36 .............C...G..G.C...C..C.....A... TTAGAACACTCATCAAACATAGAGCCCACATCAGTG 135832 38 87.2 37 .....A....TG..............T........-... GCTAGAGCATCCCTCAAACATAGATTTCATATTAACT 135907 39 79.5 0 .............C...G..GGC...C..C.....A... | ========== ====== ====== ====== ======================================= ===================================== ================== 9 39 87.2 36 ACATTTGAAACATTCCAATTATTTAAAGGTTGATTGAAA # Left flank : TGAGGTTGCCTGTTTCATTATACACATAAATCATATGACCACTGCTACTTATAATTGATACTGAACTGCTTGAATAGCCATCCAATTTTCCAGCATACGAAAAAAGATACGAACCTTTTTCATCATAGACAAAAACTGAACTACCGTTTTGGATAGCATATCCTATTTTTCTTTTTTGATTTTGCGATGAATTGTTGTTTTGTTGTGTTTGCTGTGCTGTATTGCGTGCTTGTTTTGCTTCACTTCGTGCTTGCCTTGCTTCATTCTTAGCATGCCTTGCTTCATCTCGTGCTTGTTTTGTGTATTCTTTCTGTTCTTCTATTTCTTCTTGCATACGCATTTGTTCTTGTTTAAATGTCTCTTGCTGTGCCCTCAACTCTTCTTTCATTTGTTCTACTTCTTTTATTTGCTGTTTCAATATAAGCTCTTGTTGTTTATAGCCAAACCAAATAGGTGGTCTAGTCATATTAGAGCCAGTAAACATATCTTTTATATCAGCT # Right flank : ATCAGAGCATTCGCTAAACATAGAGCTCATATCAGTTACATTGCTTACATCCCAAGTCTCAATGCCTGAAAAATTATCTCTTGTGCTCTCGGCAAACAAACTACTCATATCTGTAATCAAGCTAGTGTTAATATCGCCTAAATCGACTTTATTATTTTTTACAAGCTTTTTTAATTGTTTAATATCTTTTGGCAGATACCTTCCGTCGCTATCCTTTGGCACGCCACCAAGCAAAACTCTCACAACTTCAAAAAATCCCATTTTTACTCCTTTATTTTTATTTTTTCTCTGTTATTCTAAAAACTGCATAAAAAGCTTTAAAATAACACCGTAGCATTTTAAACATTTTTTGTGATTATGGCAAAAAAACAATTGATTGAGTTTTTTTAATTTTTTCCATATTTATACTCCTTATTATCGCATTTTACTATTTATCCAACTAGGCATATTTTCTCATCCATGCCTGATTCTACAAGCACACCACTTGTATCAACCAAATT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.36, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACATTTGAAACATTCCAATTATTTAAAGGTTGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [20-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //