Array 1 2638-4067 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCTJ01000048.1 Bacteroides uniformis strain BIOML-A3 scaffold48_size27417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2638 47 100.0 30 ............................................... TCAAGTCCTTTCTTAGATATACCTATATGA 2715 47 100.0 30 ............................................... GTGCTGCCTATTCAAATATTCTTCCTTCCA 2792 47 100.0 30 ............................................... AAGCCGTCCGCATCGTACAGTCTCACGGCA 2869 47 100.0 30 ............................................... CCAAAAGCTCGTCACGCTTGTTGTAGTGCT 2946 47 100.0 30 ............................................... TCTATGGTCCTTATTGAAGGAAGGCGAAAA 3023 47 100.0 30 ............................................... GCGGTTGGCAGTTACCTAAAGACAGCGATT 3100 47 100.0 29 ............................................... TATATCGTTCGCTGAGAATTGAATATTCT 3176 47 100.0 30 ............................................... AAATGAACATTATGGCGAAGAAGCCATTCG 3253 47 100.0 30 ............................................... GTTAATTTTTATAATCTCGCCACAAAAATA 3330 47 100.0 30 ............................................... CGTGTCGGTGTCCCACACATAGCCACACAA 3407 47 100.0 30 ............................................... CTTGAATAATTCTAAGCTTTTTAAATTTCA 3484 47 100.0 30 ............................................... GCCGTACAGAAAAAACGCATAGGACTTATA 3561 47 100.0 29 ............................................... AACATATTACAAGTAAGAGCAACAAAAAA 3637 47 100.0 30 ............................................... GCCGGGCATATACCGCCCGATACGATTCGA 3714 47 100.0 29 ............................................... AATCTCTTTCGCGTAATCAATAACGAATT 3790 47 100.0 30 ............................................... CCGTTTTTGTTTGTAAATTTGTATTGTTTA 3867 47 100.0 30 ............................................... GATGACCGTCGTAACCGACGGAATCGACGG 3944 47 100.0 30 ............................................... TGATACACAATATAGGGCATTTTCCATATT 4021 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : AATCTCTATGCCTTGATCGCGCAACCGGCGCCACATGTCAATCTTGCGCATCTGCTGCTTGCGCAATCCGGCCGCGGCATTAGACCGGTTGCGGGCCATGAAGCCGTCTATCGCCTCCATCACCTGCTGGTTCATCACTCTGCGGACACGTTTGCTGCTGTCATAGCGCACCGGCTGCTGCAGGTACGTGTCCATTGCTTCCGCATCGGGGTTGTCACCGACCGCTTGTTCGAAAGCCCGGAGATACTTGCGTACAGTCTTGCGGCTCATGCCGTTACGACGGGCGATCTCACGGATGCTCAATCCGTCACGCCTATAGGCGAGAATTATGGAATCTCTTTCTTCCATGTGGTACATATTATGAACGCCATTGGTTTTTATGAATATACCAATTTTGTTCGGTTAAACATACCCATGGGTGGGGCACTTTTTAAATGTTGTTCCGGGTCCCTTTTCAAGTGTTAGCTACAAACTTACGCATTTTTAATTACATTATTTAC # Right flank : CTGATTACAAGTAACAATCTAATATTCAAACGATTACACATAGTGTTAGAATATAAAAAAAGAATGCTGCTTCTAAAAAAATCCCGCCATTGCGCGGGATTTTTTTAGAATAATTCTAATTGTTGTCCAGGCGTATTCACATCCACAGTCTTTTTCCCATAAAAAAGTGCTATATTTCCAAATTGCTTGTCCGTAATGCACATAATTCCGACACTTCCATAGTCCGGTAAGAAAGATTTAACTCTTTTTATATGTACCTCCGCATTCTCACAACTCGCACAATGACGAACATATATAGAGAACTGGAACATCGTAAATCCATCCTTTTGCAGATTTTTTCTAAATTCCGCATACGCCTTTTTATCCTTCTTGGTTTCGGTAGGCAAATCAAACAACACTAATACCCACATAATGCGATATTCACTAAACCGGTCCATCACATCTCTGGATAGGATATTTTACGCAACTCACCACTGAAACATTTATACAGAGAAGCCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 366-88 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCTJ01000004.1 Bacteroides uniformis strain BIOML-A3 scaffold4_size193894, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 365 47 93.6 30 ....................GCT........................ AAGCCGTCCGCATCGTACAGTCTCACGGCA 288 47 100.0 30 ............................................... TTTTTTGCCATCATTTTCTCACCAAGTTGT 211 47 100.0 30 ............................................... CCCTTCGCAGGTATTCGTTATGTTCATCCT 134 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 98.4 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TGTTCTGTATGGCAGGGCCTGCTTTCCATATTTCGTCCAGAAACACGACATCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCGTACTTATCGGATTCTTTCAGCCGGCTGATGCTGACGGGACCGAATATCTCGTCGGGTGTAGAGAATCGGGACATCAGGTATTCGAAGGCACGGGCATCTGTAAAAGCAGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGCCCCAGGAGCAGGATGCTCTCACCTGCCAGGGCTGCCAGCAGGGAGAGGTTTATTTCGGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGGCGGATGCGTTGGATCATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAAGTGTGTAAAGATACCAAATAGTAGCGAAATCAGAGAGATTCTTATTAAGATTCACTATCTTTGGAAAACAAATACACACAGACACGCACACACAC # Right flank : CAACTTACGCATGTAGCTAACACTTGAAAAGGGACCCGGGTAGCATTTGAAACGTGTACCACCCGATAGGTTTTGCAAAGTTAATTAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //