Array 1 911-83 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTH01000040.1 Streptococcus agalactiae strain ILRI064 Contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 910 36 100.0 30 .................................... AACTCTAAGAGACCTCTATCGAGATTTCTT 844 36 100.0 30 .................................... TCCATTTATGTATTTCTCCTTAAAAATAAA 778 36 100.0 30 .................................... CTAACCCTTCTTTGATATCTGCTTCTATTT 712 36 100.0 30 .................................... AATAAAACACAACTCCGAAAATGGTTATAT 646 36 100.0 30 .................................... TTTACAAAAAGTTCCGTCTCGTGGTCATTT 580 36 100.0 30 .................................... AGAAGAAGATAAGTTTCGTATTTACTTTAA 514 36 100.0 30 .................................... TCCAAATCGTCCAAAGTGATAATAACCAAT 448 36 100.0 30 .................................... TAAAAATGCAGTTACTGTTACAGGTAATAT 382 36 100.0 30 .................................... AATGCTTGCAACGATTACAAGACATCAGGT 316 36 100.0 30 .................................... CTAAACCAATACATCCGTCAATCTCTGTAT 250 36 100.0 30 .................................... ATTTAGTGCTAAGCGTTCAACTGGCTTACT 184 36 100.0 30 .................................... TTAAAGTTGACGACCAAATAAATAGTCTGT 118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CAGTAACTCTGGTC # Right flank : CTTGAATTGTAGAATAGATGTCTACTGGCTTGTTTTAGAGCTGCGCGGTTATTATGCTAGGGCATCATTGTGGTGTTCTAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 29552-29123 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTH01000042.1 Streptococcus agalactiae strain ILRI064 Contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 29551 32 100.0 34 ................................ AAGAGATGCAAGTGTGGCAATGAAGAATTTTACA 29485 32 100.0 35 ................................ ACCAACCTTGGGCGGTAGACTTTGACAAAAAGTCA 29418 32 100.0 33 ................................ AGCTTGGTAGCCTCATTGATAGCTTGTATTGTT 29353 32 100.0 34 ................................ AGTATTCCAAGTCAATGTTTTATGTAGCAATAAT 29287 32 100.0 37 ................................ TGGAATGGTGCTGAATGGATTATCAATTCTTTTAGCG 29218 32 93.8 33 .....C..............A........... TAATAATGATTATCTTTTTATTAATTCATTATC 29153 31 78.1 0 A....-.............T..A.T..T..C. | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 96.0 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTGATTTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCACAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACATTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127090-128049 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTH01000051.1 Streptococcus agalactiae strain ILRI064 Contig51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 127090 36 100.0 30 .................................... AATTTTGCTCTAAGACAGTAACTCTGGTCT 127156 36 100.0 30 .................................... AACTCTAAGAGACCTCTATCGAGATTTCTT 127222 36 100.0 30 .................................... TCCATTTATGTATTTCTCCTTAAAAATAAA 127288 36 100.0 30 .................................... CTAACCCTTCTTTGATATCTGCTTCTATTT 127354 36 100.0 30 .................................... AATAAAACACAACTCCGAAAATGGTTATAT 127420 36 100.0 30 .................................... TTTACAAAAAGTTCCGTCTCGTGGTCATTT 127486 36 100.0 30 .................................... AGAAGAAGATAAGTTTCGTATTTACTTTAA 127552 36 100.0 30 .................................... AGAAGAAGATAAGTTTCGTATTTACTTTAA 127618 36 100.0 30 .................................... TCCAAATCGTCCAAAGTGATAATAACCAAT 127684 36 100.0 30 .................................... TAAAAATGCAGTTACTGTTACAGGTAATAT 127750 36 100.0 30 .................................... AATGCTTGCAACGATTACAAGACATCAGGT 127816 36 100.0 30 .................................... CTAAACCAATACATCCGTCAATCTCTGTAT 127882 36 100.0 30 .................................... ATTTAGTGCTAAGCGTTCAACTGGCTTACT 127948 36 100.0 30 .................................... TTAAAGTTGACGACCAAATAAATAGTCTGT 128014 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAATAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CTTGAATTGTAGAATAGATGTCTACTGGCTTGTTTTAGAGCTGCGCGGTTATTATGCTAGGGCATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGCAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTATGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGCAGTGAAGAATCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //