Array 1 9300-11159 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVT01000043.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5648 NODE_43_length_40756_cov_46.218342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9300 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 9361 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 9422 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 9483 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 9544 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 9605 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 9666 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 9727 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 9788 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 9849 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 9910 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 9971 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 10032 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 10093 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 10154 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 10215 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 10276 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 10337 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 10398 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 10459 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 10520 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 10581 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 10642 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 10703 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 10764 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 10825 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 10886 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 10947 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 11008 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 11069 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 11130 29 96.6 0 ............T................ | A [11157] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9174-7194 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVT01000076.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5648 NODE_76_length_14506_cov_43.577926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9173 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 9112 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 9051 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 8990 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 8929 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 8868 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 8807 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 8746 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 8685 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 8624 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 8563 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 8502 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 8441 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 8380 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 8319 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 8258 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 8197 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 8136 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 8075 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 8014 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7953 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 7892 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 7831 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 7770 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 7709 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 7648 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 7587 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 7526 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7465 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7404 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7343 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7282 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7221 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //