Array 1 4514140-4511057 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024940.1 Aeromonas caviae strain KAM339 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4514139 29 100.0 33 ............................. CGACCTCGCGGCGCCAGATAGGAATCCCCATGC 4514077 29 100.0 32 ............................. CAGATGGGATACCCGGTCACCATCGGGTTTAT 4514016 29 100.0 32 ............................. CAGAGTTCCGACAGCGCAACCGATAATAGAAA 4513955 29 100.0 32 ............................. TGCCGCAGTATTCTGAGTAGGCGAGTTCGTGG 4513894 29 100.0 32 ............................. TCTCCCCCTCGGCTACCGCGATAGCCTGGAGC 4513833 29 100.0 32 ............................. GCGGTGGATGAGCACCTTGCCGACCGGCTCCA 4513772 29 100.0 32 ............................. CGAGCTCGACCTCCCAACGGTCGGGCTAGACC 4513711 29 100.0 32 ............................. GGTGATACGGCTACCGACCAACGCCTTGAGCT 4513650 29 100.0 32 ............................. GCGACCTATTCAGAATCTCGGTTTGGGGAGCA 4513589 29 100.0 32 ............................. GCCAACGGCCTTGGCGATTTGGTCGGGGTCTT 4513528 29 100.0 32 ............................. CCTCCGGTCAGCTTCTCGAACTCGATGCGGGT 4513467 29 100.0 32 ............................. GGCATGTTCCCGAGCGGCATCGTATAAACGGC 4513406 29 100.0 32 ............................. ATATCAGGCCTCGCTGATTTGTTGGTTTTCGA 4513345 29 100.0 32 ............................. TAGGCGGCGACGCCAAGCAGCATCTTGGTGTA 4513284 29 100.0 32 ............................. GGGTAGAGACATGTTTTATTCGAAATCTACTG 4513223 29 100.0 32 ............................. ATCCGCGCCACCTGGGGCGGGCTGGTACTGGC 4513162 29 100.0 32 ............................. AGCTGCTTGATCTCTATGCTCAAGGTTTATTG 4513101 29 100.0 32 ............................. CTCATCGTCAACGCTAACAGCAGCCAAGCCTG 4513040 29 100.0 32 ............................. CCCTCAAGAAGTTCCGAAACAACGACATGGGC 4512979 29 100.0 32 ............................. CTGGCCAGAACCCGATGGACAGATCAGGGCAC 4512918 29 100.0 32 ............................. AACTGGCTTTTAACTCTGACGACTTGGTGAAT 4512857 29 100.0 33 ............................. TGGGGCATCTTCGAGCCGGGCAAGGAGGATGGC 4512795 29 100.0 32 ............................. ACCTACGTGCAGAGCGACCTGCTCGACCTGAT 4512734 29 100.0 32 ............................. ACAGCGAAACCGGCGCCCTCTATCACCCCACC 4512673 29 100.0 32 ............................. CGCACCGTCGCCACCCCTGTCTGGTAGTTCAC 4512612 29 100.0 33 ............................. AGATGGGGCGACTGCGGTTCTCGATGCCGAGTA 4512550 29 100.0 32 ............................. ATCGAGGCCGATCGCGCCTTCACCGAGGCTGA 4512489 29 100.0 32 ............................. GCTTGAACCGAGATCCCCAGGCTTGCAGCCAT 4512428 29 100.0 33 ............................. GCCGCCGCCTGGGTGGCGGTGGTGGGGGTCTGC 4512366 29 100.0 32 ............................. GCCGCCGCCGAGGAGGCTTACAAGGCGGGCAA 4512305 29 100.0 32 ............................. TGGTTCTGGTGCTCGGAGAGCAGCGAACCTGC 4512244 29 100.0 32 ............................. AAGGTGAGTTGGGTCTGGTCGGTCAGCCAGGC 4512183 29 100.0 32 ............................. GCCGCCGTATGTTGGGGGTTTAATGAATGTTT 4512122 29 100.0 32 ............................. CAGGTGGGCGGGGTCTGGTCGGTGACCATCGC 4512061 29 100.0 32 ............................. CAGCAAGAAGAGCCCGTTGTCGAGCCGGCCGC 4512000 29 100.0 32 ............................. TACTTCGTCGCCACCATCGCAGGGCAAGCAGG 4511939 29 100.0 32 ............................. CCACCAAATTTGTCCGCCGCCCGGTGTCCGTG 4511878 29 100.0 32 ............................. GCTGCGGGGAAAACGGCACCTTTTGAGTTCCC 4511817 29 100.0 32 ............................. AGAAGTTGGCCATGATCGCAGCGGCAGATCAT 4511756 29 100.0 32 ............................. CCGGGGGTCACGTCGATACGCAGCGCCTGGGC 4511695 29 100.0 32 ............................. GCAGCGGGGAAAACGGCACCTTTTGAGTTCCC 4511634 29 100.0 32 ............................. GGCGAGTACGTCAGCCAGTGCGTTAATGGCCA 4511573 29 100.0 32 ............................. CCCGCATATCGACAAAACGGGGCTCTGTGATG 4511512 29 100.0 32 ............................. TAGTAGTGATAGATCGAGGTGCGGTCCGGGTC 4511451 29 100.0 32 ............................. ATGACCGTGCGAGAGATGCGCGATCTCATCGA 4511390 29 100.0 32 ............................. GTGTAGACCACTTGCGGGCGGCCACGGGAGCC 4511329 29 96.6 32 ..............T.............. ACTCCGGGGTAGCAAGAACTCAGCTCACCGGG 4511268 29 89.7 32 ...C....T...T................ GTTGCTGGCACCCTGATCGACCGCGCCGTGCT 4511207 29 96.6 32 ..............T.............. CTTGAAGGGAGAGACTCCTAGGGATGATAGAG 4511146 29 79.3 32 ...........TTTT.T.........T.. ACCCAGCGCTAGGCGGCCATCGAGGCGCTATT 4511085 29 89.7 0 ..A.......A.T................ | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.1 32 CTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : CCGCTTATCGAGGAGGTGCTCTCGGCCGGGGGCATCACCCCGCCAGACGCCCCTGCAGATGCCCAGCCGCCTGCCATCCCCGAACCCGCCGGCATGGGGGATGCCGGTCACAGGAGTCAGTGATGAGCATGCTGGTGGTGATCACCGAGGATGTGCCGCCGCGCCTGCGCGGCCGGCTCGCGGTCTGGTTACTCGAGGTGCGTGCCGGTGTCTATGTGGGAGAGGTGTCGCGCCGGGTGCGAGAGATGATCTGGCAGCAGTGCGAGGCTTTGGTCGAGCAGGGCAATATCGTGATGGCCTGGCCCGCTAATAACGATTCTGGTTTTGACTTTCAAACCCTGGGGACCAATCGCAGGGTGCCGGTGGACCTCGATGGTTGCCGATTGGTCTCTTTTCTACCCATTGAAAATCAATAGCTTAGCGTTCATTAACAATCTGGACTAGTCGGTGGCTTTTCTATGGTTGGAAAAAGCCATCAAAATCAATAGCATCTGTTAAGT # Right flank : AATCTCTTCGGCATGGCATGCTCTCGATTACGTGCTAGGGTAATCGTTCTGGCTGTCATTGTTTGATGAGCCGCGAGAGCTGATGGCGGACATTTTCTGTATGGAGATGGTATTCACCTGACAGTTGCCCACAAAAGGGAGTGGTCATACGGCTTCAAACCGGATAACAAAACGGTACCCCTACCGTGTTATCCGGAGTCACCGTATGACCACCAACGAGAAAGTAGCACGTCGTAAACTCAGCCTGCTAGAGCTCGCCAAAGACCTCAATAACGTCAGCAAAGCCTGCAAGCTCATCGGCTACAGCCGCCAGCAGTTCTACGAGATTCGCCGTAACTACCAGACCTATGGCGCCGAGGGCTTGCTCGACAAACTCCCCGGCTGTAAAGGCGCTCATCCCAACCGGGTCGCTCCCGAGATTGAGCAAGCCATCCTCGATTACTCTCTCACCAGACCAACCCATGGCCCGCTGCGGGTCGCGCAAGAACTGGCTCTGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //