Array 1 1474-3051 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHZ01000005.1 Bacteroides fragilis strain AD135F_2B NODE_5_length_405616_cov_70.666378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1474 47 95.7 29 ...A......A.................................... CGTTCAGCACATCTACCCATAGCTTCTCA 1550 47 100.0 30 ............................................... CGTCCGGCAAACCTACAAATTAAAAATCAC 1627 47 100.0 30 ............................................... AGATGATAGTTTCCCGGTTGCCTTCCCGTC 1704 47 100.0 30 ............................................... GTAGAGTCCTACCGTAAATTTGGCGTATAC 1781 47 100.0 30 ............................................... ATTGTATAAAAAAGCCCGCCCCATTCACTC 1858 47 100.0 29 ............................................... TGGATAGGGAATTAAGTGAAGCAGGAGGG 1934 47 100.0 29 ............................................... TTGTACTTGGCGGCTGTTGACTGCCAGTT 2010 47 100.0 29 ............................................... GATGTGCCTTTTTCTGCAAAAGTCGTGCA 2086 47 100.0 30 ............................................... ACAAAACTGGCATATTACCATTAACAAGAG 2163 47 100.0 29 ............................................... CGTACTTACCGTTTTCCGTCTCAAAATGG 2239 47 100.0 30 ............................................... CCAAAGATCTTTATTCCAATTGGCATAACG 2316 47 100.0 30 ............................................... CGTGGTAAATACACATGATTATACCATGCT 2393 47 100.0 29 ............................................... AGGAACAAAAAACCATTCGTAATACTCAC 2469 47 100.0 29 ............................................... TTCAATAAATCGGGTAAATACAAGAATAG 2545 47 100.0 30 ............................................... ACTCCTTGTCCGTCTTTATCTCGACCGAAT 2622 47 100.0 30 ............................................... TTTTATTTTGTTTAGCTCGTATTGTGCGGA 2699 47 100.0 30 ............................................... CCAAAGATCTTTGTTCCAATTGGCATAGCG 2776 47 100.0 30 ............................................... CCGCTACTGGTAAAGTTGGTGGTTCAGCCA 2853 47 100.0 29 ............................................... TCTGGACTCGTTTCTCCATAACCAAGATA 2929 47 100.0 29 ............................................... TCTTAATATGGTAAAAACCATTTTCAACT 3005 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 149348-147480 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHZ01000011.1 Bacteroides fragilis strain AD135F_2B NODE_11_length_192806_cov_58.361570, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 149347 35 100.0 35 ................................... AAGCTTTATCGGCAGCATTTCTGCTGTTGCATGTT 149277 35 100.0 33 ................................... CCCGCAGGGGTTCGGCATCGGCTGCCAGTTCAG 149209 35 100.0 37 ................................... ACAACTGTCTACCTTCTTCATGAGACTGTGCTGAAAA 149137 35 100.0 35 ................................... GTCTTTGGAATTGTTCGCCAATCCAATCCTTCACT 149067 35 100.0 37 ................................... ACAACTGTCTACCTTCTTCATGAGACTGTGCTGAAAA 148995 35 100.0 35 ................................... GTCTTTGGAATTGTTCGCCAATCCAATCCTTCACT 148925 35 100.0 36 ................................... AAATAATCCTATTAACGCTACTGATATTAATCCTAA 148854 35 100.0 38 ................................... GGTACCATTGACGGTTACAGAAGTTCTTGCTTCTTTTT 148781 35 100.0 34 ................................... ACATATAAGACAGCGGCAACAATTGCGCAACAAA 148712 35 100.0 34 ................................... ACAAAAGGTGCTTTAGGGGCTGCAGAATAATTAT 148643 35 100.0 33 ................................... TTAATAGCCTTTTCTATACCTCTCAGTAATGTA 148575 35 100.0 35 ................................... GTCTTTCATTGTCTCTCCGTGAGACTGCATATAGA 148505 35 100.0 36 ................................... ACGGAACCGATACCTTGTTGAGGTACGACTTTGGGT 148434 35 100.0 35 ................................... AAAATCGTTACATAAGTCCCGCTTTCTTTGACCGA 148364 35 100.0 36 ................................... ATGTCACGGTTTTCCGCAAACTTTGAAAATTTTTCA 148293 35 100.0 40 ................................... TCTACTGCTTTGGTTCCGGTCTGCTGGTGGCCTGAAAAGA 148218 35 100.0 37 ................................... AATATTTCTGTACGTTCCATAAATATAAAGAATTAAT 148146 35 100.0 37 ................................... AAGCACCGGCCAAAACCGTCAAATCACCGTATTCAAA 148074 35 100.0 34 ................................... TTTAATGTCGATTTCAAAATTGACGGTTATTTTT 148005 35 97.1 35 ..........................A........ GCCAACCCATAACTAAGATAAGCAGCTTAGGAAGC 147935 35 100.0 34 ................................... ATGATTTCTCAACTGGTAATGCCTTTCAGTAACC 147866 35 100.0 34 ................................... ACAAAACATATTCCCGGCCTTGAAGACAATAATT 147797 35 97.1 36 ................A.................. GGCTTACATTGCTGTAAACCTTCAAATCCAATGTCT 147726 35 100.0 39 ................................... ATTCATAGGTATCAAATTTTTAAGTTAATACTAAATTCT 147652 35 100.0 34 ................................... ACATAAGCAGCATCAATTTCGCTACGACACATAA 147583 35 100.0 34 ................................... ATCGAGCCGCCTCGGTCAATCTTCGGAGTCTTAA 147514 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 27 35 99.8 36 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATGCACTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTAAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAATTACATTGTAGATGCTTTGGATATTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //