Array 1 132246-131786 **** Predicted by CRISPRDetect 2.4 *** >NC_022900.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 132245 28 100.0 33 ............................ TAATTTGAAATTGTTAAAGAATCTAATAACGCT 132184 28 100.0 32 ............................ TCCCTGCCGCATCATATGACCGCTGCCCATAT 132124 28 100.0 33 ............................ AAACAACAGATCAGCCAGATCACCGCATATCAG 132063 28 100.0 32 ............................ AGCGTGCTTTTGTCGATGCTTTAATCGATTGG 132003 28 100.0 32 ............................ AGTAACCATATCCCATAAGCTAATAGACGATG 131943 28 100.0 32 ............................ GGATTGTGGGCATGGGGCAATCATCAGCATAC 131883 28 100.0 43 ............................ TGCTAGAGCAAATTCAGGCAATGTTGGCCGAAATGCGGATGAA 131812 27 82.1 0 ....................-..GCTT. | ========== ====== ====== ====== ============================ =========================================== ================== 8 28 97.8 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGGATTAGACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCTGCATGGCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAGATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : GAATTTATTGTATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTGGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTACGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACGATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGCGCCATTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1255391-1255703 **** Predicted by CRISPRDetect 2.4 *** >NC_022900.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1255391 28 100.0 33 ............................ GAACAGAAGGATTTTTGCCCGGGACAAAATTTT 1255452 28 100.0 32 ............................ TACCCCAGCTTTGCGCTTTAGCGTTGCGGTAA 1255512 28 100.0 32 ............................ AGAAACTCCAAGAAGAGATCGCAACCGAGCGA 1255572 28 100.0 32 ............................ GATTAAAAAGACACGATATGCGATGTGGCCTA 1255632 27 89.3 17 .....................A.-C... TTATCAAAACCGATGCC Deletion [1255676] 1255676 28 67.9 0 .A...TAT..C..........C.TC..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 29 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGCTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGCCCCTAATTTGACCATCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAACAGCTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : CATAAAAACATTTAAAAACAAATACTTAACCACCAACATATTACACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAAGGCAAACGGCCTCACCCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTTTCACTATCCCGATACCCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGATATGGCCAAAACACAGTCCACAAGCCATCCGTCTGTTCACGACCTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1794881-1794553 **** Predicted by CRISPRDetect 2.4 *** >NC_022900.1 Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1794880 28 100.0 33 ............................ TGTTGAGCTGCGACGTTATGCTGAAAAATTGGC 1794819 28 100.0 32 ............................ AATGCTCAAGCAAAGCCAGCAATGTCACAAGA 1794759 28 100.0 32 ............................ ACCTTGCTTGTCAGTGACGATAATATTACCTT 1794699 28 100.0 32 ............................ TACTCGGATCATGGTATCCGGCCCGACTGTCG 1794639 28 100.0 32 ............................ TGATCGTCGCAGAGTTATTATCGAAGACACGC 1794579 27 78.6 0 .............T...T..A..-.T.C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACGAGAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAGAAGTCGAGATAAAAAGGCCTATTCCTTTTGCAGAGGAGACAGTGAGAATGAGGTTTTTATTGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCGCGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTGGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGAGTTTTTAATTATTTACTCTA # Right flank : TTATTTAAGTGTTGTTTTGTTTCATGGTTGGGGAATGTTTTATCGAAGGCTATTCTGTTCTCAAAATATGTCGCTGTTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAGGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //