Array 1 277753-278942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069563.1 Bacteroides fragilis strain FDAARGOS_1225 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 277753 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 277817 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 277881 29 100.0 37 ............................. AAAGTATTCAAAGTAGTTCTGGAACTCCGGGATATAA 277947 29 100.0 35 ............................. TGCAGAAAAGCTGTTCTTTAGTTTATTTATACACT 278011 29 100.0 37 ............................. TACAGGGGTTGACCGTTGTTGCACACCCGTTTGCTGA 278077 29 100.0 36 ............................. TAAGGTACGATTAATTCTTTGCAACGACACAAAGGT 278142 29 100.0 34 ............................. ATAGTTGTTCTTTTGTAAAATGTTTCATTATTGT 278205 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 278270 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 278335 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 278398 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 278461 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 278527 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 278592 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 278655 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 278718 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 278783 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 278847 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 278913 29 93.1 0 .........................G.C. | A [278937] ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.3 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACGTTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCATGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 2410492-2410639 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069563.1 Bacteroides fragilis strain FDAARGOS_1225 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 2410492 26 96.2 35 ...................T...... CATGATAAAGGTACATAACTCAAGCCACAAAAAGC 2410553 26 100.0 35 .......................... CCTTGCTTATCAAACAAATACTTAGTATTTTTGTT 2410614 26 96.2 0 ........................A. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 97.5 36 TCAAATTCACAATATATTGGGAATTT # Left flank : TACCGACACCGGGGAAGTAAACTCCATACTCAGGCTGTCGGACTATGGGAGGAAGGGAACGACGGTATGGAAACTGATTGCCAACACTTGCTGGAGCGACATCGGAGCCAAAGGAAGATACCTGATAGCGGCGCTAAACAAGACGAAAAGAAGGTAGCAGAGAGTGTCAGTCCCCTATTTGTAGTTGACAAAAAAGCAAGTATACAGGCTTTTGACCAGAAAGGGATTCAGTGAAACAAAGAAGTAAAAAGTGTGCTTAACGAACTAAAACACAGTGTTTTTAAAGCACAAGATTTCTCTCGCCCAAAGCTTTGTTTTAACGCTACGTTAAAGCTTGTTCTTTAAATGCAAATAGCAAGTGTTTTCAATGCAAAAGGCTTGTTATTTGCACACAAGAATAAAATAACGGAGAAATGGAGTTAACAATGTTAATTGAGAAACACTCTACAAACAAAAAGAAATCTCTGTCATTCTAAAATCAAAAGTACAAATAGCCATAA # Right flank : TGAAACAAATTGGAATACAGATTCGCCAACGAAGAAAAATGTTGGGTATAAATCAGCAAACACTTGCCGATTTAGCACAAATCAGTATCAATACTATAACAAAAATTGAAAATGGAGAAATAAATATTAATTTTCAAAAGCTCTATGCCATATTGGAGGTATTAGGATTAGAACTTTCTCTGAAAATTAAAAATAAGGAGGGACATCTATGAGACAAGGAGTCGTATACTTGAATAAAGAACGGGTAGGCATTATTACGGAATTATCTTCTAACGAATATAAATTTCGCTATGATGACGAATATTTCAATGATCCATCAAAGCCCTCCATAAGCCTGACATTGACAAAACAACAACAGGAATATACTTCCCATTATCTATTTCCTTTTTTTGCCAACATGCTGTCAGAAGGGCACAACCGCATCGTTCAGGCAAGATTATTGCAGATTGATGAAAAAGATGATTTTGGTATTTTATTAGCTACAGCACATACCGACACGG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAATTCACAATATATTGGGAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 3764810-3764148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069563.1 Bacteroides fragilis strain FDAARGOS_1225 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3764809 47 95.7 30 ...A......A.................................... TTTATTGGATGTGGAAAACATACAGGGGTT 3764732 47 100.0 30 ............................................... ACCATCAGCCTTAACACCAAAGATAGAGTC 3764655 47 100.0 30 ............................................... ATCAAGTTTATAGGTTGTTTTAACGTCTCC 3764578 47 100.0 29 ............................................... CACCCTCTGTTATTTCCCACCCTCCCTTG 3764502 47 100.0 30 ............................................... AAACGGGACATCATTATCTATCAGTCCTCC 3764425 47 100.0 30 ............................................... ATTGACGAAATGCCTATCGTCCGTTACCAA 3764348 47 100.0 30 ............................................... TATTTGAATAGAGAAGATACCGTGGTAATA 3764271 47 100.0 30 ............................................... ATTTGTCGGCAATTTGTTCCTCTATCTGCT 3764194 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : AGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //