Array 1 556330-557658 **** Predicted by CRISPRDetect 2.4 *** >NC_018587.1 Listeria monocytogenes SLCC2755, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 556330 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 556396 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 556461 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 556525 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 556591 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [556603] 556659 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 556724 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 556789 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 556855 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 556919 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 556984 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 557049 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 557114 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 557177 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 557240 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 557306 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 557369 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 557434 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 557500 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 557565 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 557629 29 93.1 0 .......................A....C | C [557652] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2692865-2690184 **** Predicted by CRISPRDetect 2.4 *** >NC_018587.1 Listeria monocytogenes SLCC2755, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2692864 36 100.0 30 .................................... CGAATACCTTTGTCAAGAAGCAAGGCGTTA 2692798 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2692732 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2692666 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2692600 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2692534 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2692468 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2692402 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2692336 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2692270 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2692204 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2692138 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2692072 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2692005 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2691939 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2691873 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2691807 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2691741 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2691675 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2691609 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2691543 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2691477 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2691411 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2691345 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2691279 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2691213 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2691147 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2691081 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2691015 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2690949 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2690883 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2690817 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2690751 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2690685 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2690619 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2690553 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2690487 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 2690420 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 2690354 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2690288 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2690222 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2690187,2690190,2690195] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //